RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ABI2Q9NYB9 513 aaPredicted RBP12.93□□□□□ -0.34
USP40-210ENST00000454354 PROB1E7EW31 1015 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 STK25O00506 426 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 STAU1O95793 577 aaKnown RBP12.92□□□□□ -0.34
USP40-210ENST00000454354 DLATP10515 647 aaKnown RBP12.92□□□□□ -0.34
USP40-210ENST00000454354 PSMC3P17980 439 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 GABRR2P28476 465 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 PCSK1P29120 753 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 CDC25CP30307 473 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 NBL1P41271 181 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 VIPR2P41587 438 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 SYKP43405 635 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 NDUFA8P51970 172 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 GRM2Q14416 872 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 ANGPT1Q15389 498 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 CFAP221Q4G0U5 840 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 STXBP5Q5T5C0 1151 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 MFSD6LQ8IWD5 586 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 RDH13Q8NBN7 331 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 FNBP1Q96RU3 617 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 TRMT61BQ9BVS5 477 aaKnown RBP12.92□□□□□ -0.34
USP40-210ENST00000454354 KCTD10Q9H3F6 313 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 SLITRK6Q9H5Y7 841 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 FAM86C1Q9NVL1 165 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 DMAC2Q9NW81 257 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 SIT1Q9Y3P8 196 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 R3HCC1Q9Y3T6 440 aaKnown RBP12.92□□□□□ -0.34
USP40-210ENST00000454354 GVINP1Q7Z2Y8 2422 aa12.92□□□□□ -0.34
USP40-210ENST00000454354 CFAP54Q96N23 3096 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FRYLO94915 3013 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 SHISA7A6NL88 538 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 TULP1O00294 542 aaPredicted RBP12.91□□□□□ -0.34
USP40-210ENST00000454354 ARNTLO00327 626 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 PDXKO00764 312 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 EXOC3O60645 756 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 RHOBTB3O94955 611 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FAM163BP0C2L3 166 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 GLULP15104 373 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 HMGA1P17096 107 aaKnown RBP12.91□□□□□ -0.34
USP40-210ENST00000454354 TNNI1P19237 187 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 WARSP23381 471 aaKnown RBP12.91□□□□□ -0.34
USP40-210ENST00000454354 ACAT1P24752 427 aaKnown RBP12.91□□□□□ -0.34
USP40-210ENST00000454354 CLDN10P78369 228 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FCHO2Q0JRZ9 810 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 BECN1Q14457 450 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 ARHGAP15Q53QZ3 475 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FAM171BQ6P995 826 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FSIP1Q8NA03 581 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FAM200AQ8TCP9 573 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 PLEKHO2Q8TD55 490 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 IRF7Q92985 503 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 CCDC127Q96BQ5 260 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 RSPRY1Q96DX4 576 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 FUBP3Q96I24 572 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP40-210ENST00000454354 PI4K2AQ9BTU6 479 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 ATXN3LQ9H3M9 355 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 GOLPH3LQ9H4A5 285 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 BRD9Q9H8M2 597 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 LTB4R2Q9NPC1 389 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 HEBP1Q9NRV9 189 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 OBP2AQ9NY56 170 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 ZMYM5Q9UJ78 669 aa12.91□□□□□ -0.34
USP40-210ENST00000454354 SPTBN4Q9H254 2564 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 HEPACAM2A8MVW5 462 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 HCRTO43612 131 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 TACC1O75410 805 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CST3P01034 146 aaPredicted RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 RPN1P04843 607 aaKnown RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 DCNP07585 359 aaKnown RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 PRR29P0C7W0 189 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CSH1P0DML2 217 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CSH2P0DML3 217 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 GDI1P31150 447 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 MAGEA9P43362 315 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 MAGEA11P43364 429 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CDR1P51861 262 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 AP3M2P53677 418 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 MLLT6P55198 1093 aaPredicted RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 RPL10AP62906 217 aaKnown RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 DPYDQ12882 1025 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CCDC142Q17RM4 750 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 GPR158Q5T848 1215 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 KRBA2Q6ZNG9 492 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 TPRG1Q6ZUI0 275 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 TMEM150AQ86TG1 271 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 ARID3BQ8IVW6 561 aaPredicted RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 PARD3BQ8TEW8 1205 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 GIPC2Q8TF65 315 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 ZNF516Q92618 1163 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 TRMT2BQ96GJ1 504 aaKnown RBP12.9□□□□□ -0.34
USP40-210ENST00000454354 GCNAQ96QF7 691 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 SYT15Q9BQS2 421 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 TASP1Q9H6P5 420 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 GTF3C4Q9UKN8 822 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 CDH9Q9ULB4 789 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 KIAA1549LQ6ZVL6 1849 aa12.9□□□□□ -0.34
USP40-210ENST00000454354 MYO16Q9Y6X6 1858 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 MYBPHLA2RUH7 354 aa12.89□□□□□ -0.35
USP40-210ENST00000454354 LRRIQ3A6PVS8 624 aaPredicted RBP12.89□□□□□ -0.35
USP40-210ENST00000454354 SOBPA7XYQ1 873 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms