RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ITPRIPL2Q3MIP1 535 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ATL3Q6DD88 541 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 CC2D1AQ6P1N0 951 aaPredicted RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 USP49Q70CQ1 688 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 GAREM2Q75VX8 874 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 TMC8Q8IU68 726 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 BRSK2Q8IWQ3 736 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 GPD1LQ8N335 351 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 CSGALNACT2Q8N6G5 542 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 TOP6BLQ8N6T0 577 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 SUMF1Q8NBK3 374 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 LEO1Q8WVC0 666 aaPredicted RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 MRPS31Q92665 395 aaKnown RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 FUBP3Q96I24 572 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS41-208ENST00000448833 ANKRD36BP1Q96IX9 119 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 DNAJC25Q9H1X3 360 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 MAGEF1Q9HAY2 307 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ABI2Q9NYB9 513 aaPredicted RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 CGNQ9P2M7 1197 aaKnown RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 GMEB2Q9UKD1 530 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 AGAP1Q9UPQ3 857 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 COL4A2P08572 1712 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ANAPC1Q9H1A4 1944 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 DCHS1Q96JQ0 3298 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 MYBPHLA2RUH7 354 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 SPECC1L-ADORA2AF8WAN1 911 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 K7ELQ4 463 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 TULP1O00294 542 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 ARNTLO00327 626 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 PPEF2O14830 753 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 SPTLC2O15270 562 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 EIF3DO15371 548 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS41-208ENST00000448833 CUTAO60888 179 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 LRP3O75074 770 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 PAPSS2O95340 614 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 VNN2O95498 520 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 YEATS4O95619 227 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 ITGB3P05106 788 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 HSP90AA1P07900 732 aaKnown RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 KRT19P08727 400 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 C7P10643 843 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 CHRNB1P11230 501 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 PFKLP17858 780 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 HOXA6P31267 233 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 PPP3CCP48454 512 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 NASPP49321 788 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 LMNB2Q03252 620 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 ZNF268Q14587 947 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 CFAP221Q4G0U5 840 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 WSCD1Q658N2 575 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 CNNM4Q6P4Q7 775 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 C4orf50Q6ZRC1 276 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 HS2ST1Q7LGA3 356 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 KIAA2013Q8IYS2 634 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 CMTM8Q8IZV2 173 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 ZNF687Q8N1G0 1237 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 OR10T2Q8NGX3 314 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 LRRC15Q8TF66 581 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 SLC39A7Q92504 469 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 TRMT2BQ96GJ1 504 aaKnown RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 CLIC6Q96NY7 704 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 PANK2Q9BZ23 570 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 CRISPLD1Q9H336 500 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 TDP1Q9NUW8 608 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 KBTBD4Q9NVX7 518 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 DDX43Q9NXZ2 648 aaKnown RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 TBC1D7Q9P0N9 293 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 CFAP45Q9UL16 551 aa7.6□□□□□ -1.19
VPS41-208ENST00000448833 EP300Q09472 2414 aaPredicted RBP7.6□□□□□ -1.19
VPS41-208ENST00000448833 SPAG17Q6Q759 2223 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 UBE4BO95155 1302 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 MYH10P35580 1976 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 HELZP42694 1942 aaKnown RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 CCDC163A0A0D9SF12 145 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 SLC38A8A6NNN8 435 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 TISP43B9A030 160 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 USP17L7P0C7H9 530 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 ATF6P18850 670 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 POLR2BP30876 1174 aaKnown RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 CTHP32929 405 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 MAGEA11P43364 429 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 NLRP12P59046 1061 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 GRSF1Q12849 480 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS41-208ENST00000448833 NR1H3Q13133 447 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 PDGFRLQ15198 375 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 FBXO43Q4G163 708 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 INTS6LQ5JSJ4 861 aaKnown RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 LAIR1Q6GTX8 287 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 VSTM1Q6UX27 236 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 DGLUCYQ7Z3D6 616 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 LRRTM3Q86VH5 581 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 MON1AQ86VX9 555 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 SPATA2LQ8IUW3 424 aaPredicted RBP7.59□□□□□ -1.19
VPS41-208ENST00000448833 WDR49Q8IV35 697 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 EFCAB13Q8IY85 973 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 PDCL2Q8N4E4 241 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 PDILTQ8N807 584 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 KIAA1958Q8N8K9 716 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 C1orf127Q8N9H9 656 aa7.59□□□□□ -1.19
VPS41-208ENST00000448833 LINC00301Q8NCQ3 95 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms