RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SEPT5Q99719 369 aaPredicted RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 FOXQ1Q9C009 403 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 ABCB6Q9NP58 842 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 RBAKQ9NYW8 714 aaPredicted RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 AGAP1Q9UPQ3 857 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 VWA8A3KMH1 1905 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 EIF3DO15371 548 aaKnown RBP eCLIP8.36□□□□□ -1.07
CD44-211ENST00000442151 NFICP08651 508 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 HAPLN1P10915 354 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 PFKLP17858 780 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 TRIM21P19474 475 aaKnown RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 IGFBP6P24592 240 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 GABRR2P28476 465 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 ID4P47928 161 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 NASPP49321 788 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 CC2D1AQ6P1N0 951 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 SLC39A4Q6P5W5 647 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 C4orf50Q6ZRC1 276 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 BRSK2Q8IWQ3 736 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 HS6ST3Q8IZP7 471 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 TOP6BLQ8N6T0 577 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 GOLGA5Q8TBA6 731 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 BPIFB1Q8TDL5 484 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 LEO1Q8WVC0 666 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 MRPS31Q92665 395 aaKnown RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 SNX21Q969T3 373 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 CCDC47Q96A33 483 aaKnown RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 DNAJC19Q96DA6 116 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 TCEAL4Q96EI5 215 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 FIZ1Q96SL8 496 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 STRA6Q9BX79 667 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 BACH2Q9BYV9 841 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 PLA2G2FQ9BZM2 168 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 LMAN1LQ9HAT1 526 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 HEBP1Q9NRV9 189 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 TBC1D7Q9P0N9 293 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 NCDNQ9UBB6 729 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 SLC27A5Q9Y2P5 690 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 DOCK8Q8NF50 2099 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 UBE4BO95155 1302 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 ZDBF2Q9HCK1 2354 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 A0A1W2PRU2 124 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 FRMD3A2A2Y4 597 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 MEFVO15553 781 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 KRT19P08727 400 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 AVPR1AP37288 418 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 CXCL12P48061 93 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 PPP3CCP48454 512 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 AP3M2P53677 418 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 GRIN1Q05586 938 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 BFSP1Q12934 665 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 NR1H3Q13133 447 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 VITQ6UXI7 678 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 HS2ST1Q7LGA3 356 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 SPATA2LQ8IUW3 424 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 ARID3BQ8IVW6 561 aaPredicted RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 ATAD1Q8NBU5 361 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 SHKBP1Q8TBC3 707 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 CCDC34Q96HJ3 373 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 FUBP3Q96I24 572 aaKnown RBP eCLIP8.36□□□□□ -1.07
CD44-211ENST00000442151 CLIC6Q96NY7 704 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 FNBP1Q96RU3 617 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 CHRDQ9H2X0 955 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 GDAP2Q9NXN4 497 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 GMEB2Q9UKD1 530 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 NDRG2Q9UN36 371 aaKnown RBP8.36□□□□□ -1.07
CD44-211ENST00000442151 MTMR6Q9Y217 621 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 PIAS3Q9Y6X2 628 aa8.36□□□□□ -1.07
CD44-211ENST00000442151 TRIOO75962 3097 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 PRR5-ARHGAP8B1AHC4 643 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 PRPF6O94906 941 aaKnown RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 KIF20AO95235 890 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 OR4Q2P0C623 313 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 FCARP24071 287 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 TARSP26639 723 aaKnown RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 GUCY2FP51841 1108 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 ARHGAP8P85298 464 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 FCHO2Q0JRZ9 810 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 GRM2Q14416 872 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 WSCD1Q658N2 575 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 CNNM4Q6P4Q7 775 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 TMC8Q8IU68 726 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 SPEM1Q8N4L4 309 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 KIAA1958Q8N8K9 716 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 LINC00301Q8NCQ3 95 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 NOC3LQ8WTT2 800 aaKnown RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 USP28Q96RU2 1077 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 LRRC3Q9BY71 257 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 PANK2Q9BZ23 570 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 DDX43Q9NXZ2 648 aaKnown RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 MAGEC2Q9UBF1 373 aaPredicted RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 USP25Q9UHP3 1055 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 R4GN57 208 aa8.35□□□□□ -1.07
CD44-211ENST00000442151 PDCD11Q14690 1871 aaKnown RBP8.35□□□□□ -1.07
CD44-211ENST00000442151 PVALEFA0A1B0GWK0 134 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 MOSPD3O75425 235 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ITGB3P05106 788 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 ANXA13P27216 316 aa8.34□□□□□ -1.07
CD44-211ENST00000442151 POLR2BP30876 1174 aaKnown RBP8.34□□□□□ -1.07
CD44-211ENST00000442151 VIPR2P41587 438 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms