RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 MUM1Q2TAK8 710 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 PRAMEF14Q5SWL7 426 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZNF790Q6PG37 636 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 XYLT1Q86Y38 959 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 LYSMD2Q8IV50 215 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 CAVIN3Q969G5 261 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 RILPL2Q969X0 211 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 KIF1BPQ96EK5 621 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 CYFIP2Q96F07 1278 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 SENP6Q9GZR1 1112 aaPredicted RBP4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 MS4A5Q9H3V2 200 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 RNPEPQ9H4A4 650 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 SERHL2Q9H4I8 314 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 RIOX1Q9H6W3 641 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 IFT122Q9HBG6 1241 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 TMEM140Q9NV12 185 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 C9orf78Q9NZ63 289 aaPredicted RBP4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 RNF181Q9P0P0 153 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZNHIT2Q9UHR6 403 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 MAP3K2Q9Y2U5 619 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 CHST2Q9Y4C5 530 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 SPEF1Q9Y4P9 236 aa4.04□□□□□ -1.76
HMGB3P11-201ENST00000440127 SETD1BQ9UPS6 1966 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 KIF1AQ12756 1690 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ADCY9O60503 1353 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 PLEKHG2Q9H7P9 1386 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 PHRF1Q9P1Y6 1649 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 SPATA31A3Q5VYP0 1347 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CENPVL1A0A0U1RR11 272 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LCHNA4D1U4 455 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZAR1LA6NP61 321 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 AHRRA9YTQ3 701 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 EPB41L2O43491 1005 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 NCR1O76036 304 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 NDUFA10O95299 355 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 FOSP01100 380 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 KRT18P05783 430 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 MYL1P05976 194 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CHMLP26374 656 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CDK17Q00537 523 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 NEXNQ0ZGT2 675 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 OS9Q13438 667 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 MTX1Q13505 466 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 MLC1Q15049 377 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 BEAN1Q3B7T3 259 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 KRTAP15-1Q3LI76 137 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 L1TD1Q5T7N2 865 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 DPY19L2P1Q6NXN4 242 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ABHD15Q6UXT9 468 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZNF572Q7Z3I7 529 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZNF575Q86XF7 245 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ERC1Q8IUD2 1116 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 RHOT2Q8IXI1 618 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 AMOTL1Q8IY63 956 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LILRA3Q8N6C8 439 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CPEB3Q8NE35 698 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LINS1Q8NG48 757 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CASKIN2Q8WXE0 1202 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 RIN2Q8WYP3 895 aaPredicted RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 DDX17Q92841 729 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 TNPO1Q92973 898 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 MANSC1Q9H8J5 431 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 IL1RAPL2Q9NP60 686 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 VTA1Q9NP79 307 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 DDX21Q9NR30 783 aaKnown RBP eCLIP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 SAP30BPQ9UHR5 308 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 ZNF180Q9UJW8 692 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LTN1O94822 1766 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 PXDNQ92626 1479 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LMTK3Q96Q04 1460 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 LMO7Q8WWI1 1683 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 FAM208AQ9UK61 1670 aaKnown RBP4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 TNS3Q68CZ2 1445 aa4.03□□□□□ -1.76
HMGB3P11-201ENST00000440127 CPDO75976 1380 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 UTYO14607 1347 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 TTC41PQ6P2S7 1318 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 TRPM3Q9HCF6 1732 aaPredicted RBP4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 GRID2IPA4D2P6 1211 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 GRM8O00222 908 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 CDKL5O76039 1030 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 CFBP00751 764 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 ATP5JP18859 108 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 KRT4P19013 534 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 NR4A1P22736 598 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 IARSP41252 1262 aaKnown RBP4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 MCM2P49736 904 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 HSPA2P54652 639 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 NUCB2P80303 420 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 AIMP1Q12904 312 aaKnown RBP4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 MALLQ13021 153 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 G3BP1Q13283 466 aaKnown RBP eCLIP4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 SLC39A6Q13433 755 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 ADRM1Q16186 407 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 PROSER3Q2NL68 480 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 SYCP2LQ5T4T6 812 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 TSHZ3Q63HK5 1081 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 CXorf57Q6NSI4 855 aaKnown RBP4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 FOXR2Q6PJQ5 311 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 PCSK4Q6UW60 755 aa4.02□□□□□ -1.77
HMGB3P11-201ENST00000440127 Q6YL49 198 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms