RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 MAFFQ9ULX9 164 aa13.49□□□□□ -0.25
SCLT1-202ENST00000439369 PCDHGC3Q9UN70 934 aa13.49□□□□□ -0.25
SCLT1-202ENST00000439369 NME7Q9Y5B8 376 aa13.49□□□□□ -0.25
SCLT1-202ENST00000439369 LILRB3O75022 631 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 ARHGEF15O94989 841 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 LSM8O95777 96 aaKnown RBP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 PDGFRBP09619 1106 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 ARID5AQ03989 594 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 SMC1AQ14683 1233 aaKnown RBP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 ZNF394Q53GI3 561 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 PPP1R2P3Q6NXS1 205 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 LCLAT1Q6UWP7 414 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 C4orf50Q6ZRC1 276 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 SLC47A2Q86VL8 602 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 LRRC8AQ8IWT6 810 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 CCDC170Q8IYT3 715 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 OR10T2Q8NGX3 314 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 ZNF606Q8WXB4 792 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 DDX1Q92499 740 aaKnown RBP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 FUBP3Q96I24 572 aaKnown RBP eCLIP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 HNRNPABQ99729 332 aaKnown RBP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 BAG1Q99933 345 aaPredicted RBP13.48□□□□□ -0.25
SCLT1-202ENST00000439369 TLR9Q9NR96 1032 aa13.48□□□□□ -0.25
SCLT1-202ENST00000439369 CEP290O15078 2479 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 O00370 1275 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 FSCN2O14926 492 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 THAP12O43422 761 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 CD19P15391 556 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 NDUFV1P49821 464 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 GPR17Q13304 367 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 GPM6BQ13491 265 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 PTPN14Q15678 1187 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 TDRD12Q587J7 1177 aaKnown RBP13.47□□□□□ -0.25
SCLT1-202ENST00000439369 TPGS2Q68CL5 300 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 NOP9Q86U38 636 aaKnown RBP13.47□□□□□ -0.25
SCLT1-202ENST00000439369 POF1BQ8WVV4 589 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 CYFIP2Q96F07 1278 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 AGPAT1Q99943 283 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 ZNF518BQ9C0D4 1074 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 LHX5Q9H2C1 402 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 DPEP3Q9H4B8 488 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 HAUS4Q9H6D7 363 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 CRTAC1Q9NQ79 661 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 ARHGAP20Q9P2F6 1191 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 HSFX1Q9UBD0 423 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.47□□□□□ -0.25
SCLT1-202ENST00000439369 PDE4DIPQ5VU43 2346 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 VWA8A3KMH1 1905 aa13.47□□□□□ -0.25
SCLT1-202ENST00000439369 MYBPHLA2RUH7 354 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 LPXNO60711 386 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 SETSIPP0DME0 302 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 ACAT1P24752 427 aaKnown RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 MAGEA11P43364 429 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 PSMC1P62191 440 aaKnown RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 GOLGA8FQ08AF8 430 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 GOLGA8DPQ0D2H9 430 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 RAB33AQ14088 237 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 CFAP221Q4G0U5 840 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 MDH1BQ5I0G3 518 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 PRSS55Q6UWB4 352 aaPredicted RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 ZNF571Q7Z3V5 609 aaPredicted RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 TMC7Q7Z402 723 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 TMEM139Q8IV31 216 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 FUKQ8N0W3 1084 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 MRPL43Q8N983 215 aaKnown RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 SPPL2BQ8TCT7 592 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 TFAP2BQ92481 460 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 B3GALT6Q96L58 329 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 CCDC42Q96M95 316 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 CEP295NLQ96MC4 621 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 TCF25Q9BQ70 676 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 CLSTN3Q9BQT9 956 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 EMILIN2Q9BXX0 1053 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 ALG13Q9NP73 1137 aaKnown RBP13.46□□□□□ -0.25
SCLT1-202ENST00000439369 ENTPD7Q9NQZ7 604 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 HESX1Q9UBX0 185 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 CEP83Q9Y592 693 aa13.46□□□□□ -0.25
SCLT1-202ENST00000439369 PLXNA4Q9HCM2 1894 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 GRM6O15303 877 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 ARHGAP6O43182 974 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 ATP2C2O75185 946 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 CXCL14O95715 111 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 GZMAP12544 262 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 SKILP12757 684 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 CPB1P15086 417 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 CHRNB2P17787 502 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 TNFAIP3P21580 790 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 BRD2P25440 801 aaKnown RBP13.45□□□□□ -0.26
SCLT1-202ENST00000439369 CDH5P33151 784 aaPredicted RBP13.45□□□□□ -0.26
SCLT1-202ENST00000439369 CYLC1P35663 651 aaPredicted RBP13.45□□□□□ -0.26
SCLT1-202ENST00000439369 BCAT1P54687 386 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 SLC8A3P57103 927 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 FMO1Q01740 532 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 ORC1Q13415 861 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 PTPROQ16827 1216 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 ASTE1Q2TB18 679 aaPredicted RBP13.45□□□□□ -0.26
SCLT1-202ENST00000439369 HS1BP3Q53T59 392 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 VSTM1Q6UX27 236 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 RTL10Q7L3V2 364 aa13.45□□□□□ -0.26
SCLT1-202ENST00000439369 SPATA2LQ8IUW3 424 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms