RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MYBPHLA2RUH7 354 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 HCRTO43612 131 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 MOSPD3O75425 235 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 CFHP08603 1231 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 PDGFRBP09619 1106 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 P4HA1P13674 534 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 GJA1P17302 382 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 ATF6P18850 670 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 LMO2P25791 158 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 UBE2HP62256 183 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 RPL10AP62906 217 aaKnown RBP16.25■□□□□ 0.19
LIMS3-201ENST00000437679 ENPEPQ07075 957 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 TEAD2Q15562 447 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 MAPRE1Q15691 268 aaKnown RBP16.25■□□□□ 0.19
LIMS3-201ENST00000437679 ZACNQ401N2 412 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 ZNF667Q5HYK9 610 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 FAM171BQ6P995 826 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 C4orf50Q6ZRC1 276 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 SV2AQ7L0J3 742 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 OR6B3Q8NGW1 331 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 SHKBP1Q8TBC3 707 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 GIPC2Q8TF65 315 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 FUBP3Q96I24 572 aaKnown RBP eCLIP16.25■□□□□ 0.19
LIMS3-201ENST00000437679 GCNAQ96QF7 691 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 PKMYT1Q99640 499 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 KXD1Q9BQD3 176 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 MRPL45Q9BRJ2 306 aaKnown RBP16.25■□□□□ 0.19
LIMS3-201ENST00000437679 MKNK1Q9BUB5 465 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 SLITRK6Q9H5Y7 841 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 WNT16Q9UBV4 365 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 RAPGEFL1Q9UHV5 662 aa16.25■□□□□ 0.19
LIMS3-201ENST00000437679 ATP2C2O75185 946 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ECI2O75521 394 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 VNN1O95497 513 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 PDGFBP01127 241 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-201ENST00000437679 EPB41P11171 864 aaKnown RBP16.24■□□□□ 0.19
LIMS3-201ENST00000437679 CYP2F1P24903 491 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 GABRR2P28476 465 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 PPP1R2P41236 205 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 PIK3CAP42336 1068 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 PSMC1P62191 440 aaKnown RBP16.24■□□□□ 0.19
LIMS3-201ENST00000437679 SGSM1Q2NKQ1 1148 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 CFAP221Q4G0U5 840 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ARHGAP15Q53QZ3 475 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 FAM78AQ5JUQ0 283 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 C1orf220Q5T0J3 134 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ADSSL1Q8N142 457 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 TAF4BQ92750 862 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 SMARCD2Q92925 531 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ELSPBP1Q96BH3 223 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ATXN3LQ9H3M9 355 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ZFP14Q9HCL3 533 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 ZNF334Q9HCZ1 680 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-201ENST00000437679 SLC2A4RGQ9NR83 387 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 MAGEC2Q9UBF1 373 aaPredicted RBP16.24■□□□□ 0.19
LIMS3-201ENST00000437679 MAN1B1Q9UKM7 699 aa16.24■□□□□ 0.19
LIMS3-201ENST00000437679 A8MXQ7 604 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 PSMA7O14818 248 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 HLA-DRAP01903 254 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 TRIM49P0CI25 452 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 TRIM49CP0CI26 452 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 CSH1P0DML2 217 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 CSH2P0DML3 217 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 CDC25CP30307 473 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 CYP27A1Q02318 531 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 LRRC63Q05C16 580 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 ISM2Q6H9L7 571 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 TANGO2Q6ICL3 276 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 POTEHQ6S545 545 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 SIX5Q8N196 739 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 ZSCAN18Q8TBC5 510 aaPredicted RBP16.23■□□□□ 0.19
LIMS3-201ENST00000437679 GPR152Q8TDT2 470 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 MYLPFQ96A32 169 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 EEF2KMTQ96G04 330 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 ZSWIM3Q96MP5 696 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 ASB16Q96NS5 453 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 IMPG2Q9BZV3 1241 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 MMRN2Q9H8L6 949 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 CRTAC1Q9NQ79 661 aa16.23■□□□□ 0.19
LIMS3-201ENST00000437679 NRG2O14511 850 aaPredicted RBP16.22■□□□□ 0.19
LIMS3-201ENST00000437679 RFX1P22670 979 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GTF2H1P32780 548 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 MAGEA11P43364 429 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GCLMP48507 274 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GPR15P49685 360 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GPC5P78333 572 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 FKBP3Q00688 224 aaKnown RBP16.22■□□□□ 0.19
LIMS3-201ENST00000437679 PFKPQ01813 784 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 DDR2Q16832 855 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 CCDC142Q17RM4 750 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GPR158Q5T848 1215 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 ANKRD40Q6AI12 368 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 VSTM1Q6UX27 236 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 SCARA5Q6ZMJ2 495 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 GAREM2Q75VX8 874 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 SCN4BQ8IWT1 228 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 FLCNQ8NFG4 579 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 MYCBPAPQ8TBZ2 947 aa16.22■□□□□ 0.19
LIMS3-201ENST00000437679 DHTKD1Q96HY7 919 aaPredicted RBP16.22■□□□□ 0.19
LIMS3-201ENST00000437679 SMYD3Q9H7B4 428 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms