RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 GPR17Q13304 367 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 STILQ15468 1287 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 CNGA2Q16280 664 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ASIC2Q16515 512 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ARHGAP17Q68EM7 881 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 RSPO2Q6UXX9 243 aaPredicted RBP13.1□□□□□ -0.31
LINC00339-204ENST00000434233 LRRTM3Q86VH5 581 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF677Q86XU0 584 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 TC2NQ8N9U0 490 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 OR10T2Q8NGX3 314 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 MYCBPAPQ8TBZ2 947 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF606Q8WXB4 792 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 CYFIP2Q96F07 1278 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 KLHL5Q96PQ7 755 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 TMEM209Q96SK2 561 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 PKMYT1Q99640 499 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 EMILIN2Q9BXX0 1053 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 CRTAC1Q9NQ79 661 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ENTPD7Q9NQZ7 604 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 ABHD10Q9NUJ1 306 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 GTF3C4Q9UKN8 822 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 CDY1Q9Y6F8 540 aa13.1□□□□□ -0.31
LINC00339-204ENST00000434233 C2orf71A6NGG8 1288 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 EPOPA6NHQ4 379 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 MED7O43513 233 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 ABLIM3O94929 683 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 SERPING1P05155 500 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 CYP11B1P15538 503 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 GNA15P30679 374 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 GSDMDP57764 484 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 ORC1Q13415 861 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 RAB33AQ14088 237 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 NFE2Q16621 373 aaPredicted RBP13.09□□□□□ -0.31
LINC00339-204ENST00000434233 PTPROQ16827 1216 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 SGO2Q562F6 1265 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 TPGS2Q68CL5 300 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 SLC47A2Q86VL8 602 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 C12orf29Q8N999 325 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 ZNF461Q8TAF7 563 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 C2orf15Q8WU43 125 aaKnown RBP13.09□□□□□ -0.31
LINC00339-204ENST00000434233 AUTS2Q8WXX7 1259 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 PANX2Q96RD6 677 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 HNRNPABQ99729 332 aaKnown RBP13.09□□□□□ -0.31
LINC00339-204ENST00000434233 ZNHIT6Q9NWK9 470 aaKnown RBP13.09□□□□□ -0.31
LINC00339-204ENST00000434233 LMCD1Q9NZU5 365 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 MAFFQ9ULX9 164 aa13.09□□□□□ -0.31
LINC00339-204ENST00000434233 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 HIDE1A8MVS5 230 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 RFXAPO00287 272 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 TEX28O15482 410 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 ADAM12O43184 909 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 CNPP09543 421 aaKnown RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 OR4Q2P0C623 313 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 CD19P15391 556 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 RPL17P18621 184 aaKnown RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 IRS1P35568 1242 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 NDUFV1P49821 464 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PDE6CP51160 858 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PSMC1P62191 440 aaKnown RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 CDK17Q00537 523 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 ROR1Q01973 937 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 ARID5AQ03989 594 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 GOLGA8FQ08AF8 430 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 GOLGA8DPQ0D2H9 430 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 KLHL30Q0D2K2 578 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 MEA1Q16626 185 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 SLC39A12Q504Y0 691 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 MDH1BQ5I0G3 518 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PPP1R26Q5T8A7 1209 aaPredicted RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PLPP4Q5VZY2 271 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 HGSNATQ68CP4 663 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 GPR153Q6NV75 609 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 WDR59Q6PJI9 974 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 LCLAT1Q6UWP7 414 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 C4orf50Q6ZRC1 276 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 CCDC186Q7Z3E2 898 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 GDPD5Q8WTR4 605 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 TFAP2BQ92481 460 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 DDX1Q92499 740 aaKnown RBP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PCED1BQ96HM7 432 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 FUBP3Q96I24 572 aaKnown RBP eCLIP13.08□□□□□ -0.32
LINC00339-204ENST00000434233 LPIN3Q9BQK8 851 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 ZSWIM1Q9BR11 485 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 B3GNT5Q9BYG0 378 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 HAUS4Q9H6D7 363 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 ACP6Q9NPH0 428 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 TMLHEQ9NVH6 421 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 HSFX1Q9UBD0 423 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PCDHGC3Q9UN70 934 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 PCDHB5Q9Y5E4 795 aa13.08□□□□□ -0.32
LINC00339-204ENST00000434233 WDR27A2RRH5 827 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 O00370 1275 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 SOX1O00570 391 aaPredicted RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 THAP12O43422 761 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 ADH1AP07327 375 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 SKILP12757 684 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 CPB1P15086 417 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 TNFAIP3P21580 790 aa13.07□□□□□ -0.32
LINC00339-204ENST00000434233 BRD2P25440 801 aaKnown RBP13.07□□□□□ -0.32
LINC00339-204ENST00000434233 KLRC2P26717 231 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms