RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 FARP2O94887 1054 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 FOXN2P32314 431 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 HMGCS2P54868 508 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ARL4CP56559 192 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 MOGSQ13724 837 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 HIF1AQ16665 826 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 WDR72Q3MJ13 1102 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ZBTB41Q5SVQ8 909 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 NBPF12Q5TAG4 269 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 CYP4F22Q6NT55 531 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 PHLDB2Q86SQ0 1253 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ATP11CQ8NB49 1132 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 PWWP2AQ96N64 755 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ACO2Q99798 780 aaKnown RBP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 TBK1Q9UHD2 729 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 BAIAP2L1Q9UHR4 511 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ZMYND8Q9ULU4 1186 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ZSWIM8A7E2V4 1837 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 IGF2BP3O00425 579 aaKnown RBP eCLIP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ABLIM1O14639 778 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 GEMIN4P57678 1058 aaKnown RBP14.38□□□□□ -0.11
COL6A3-207ENST00000433762 DAB2IPQ5VWQ8 1189 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 GPAT2Q6NUI2 795 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 ZBTB8OSQ8IWT0 167 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 NLGN2Q8NFZ4 835 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 WRNIP1Q96S55 665 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 TELO2Q9Y4R8 837 aa14.38□□□□□ -0.11
COL6A3-207ENST00000433762 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 F8VP50 259 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 EDF1O60869 148 aaKnown RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 EDN1P05305 212 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 KRT10P13645 584 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 PROZP22891 400 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 GJC1P36383 396 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 ALDH5A1P51649 535 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 LACTBP83111 547 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 OGDHQ02218 1023 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 SLC25A11Q02978 314 aaKnown RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 WDR78Q5VTH9 848 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 TLDC1Q6P9B6 456 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 ADGRD1Q6QNK2 874 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 PNMA8AQ86V59 439 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 CEP57Q86XR8 500 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 ECHDC2Q86YB7 292 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 AGGF1Q8N302 714 aaeCLIP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 ZNF526Q8TF50 670 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 L3MBTL3Q96JM7 780 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 FAM84AQ96KN4 292 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 PCYT2Q99447 389 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 LRMDAQ9H2I8 198 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 IGKV6-21A0A0C4DH24 114 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 LRRD1A4D1F6 860 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 PI4K2BG5E9Z4 385 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 TM9SF1O15321 606 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 IL18RAPO95256 599 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 UBA1P22314 1058 aaKnown RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 STAT5BP51692 787 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 SP4Q02446 784 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 MGAT5Q09328 741 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 MKRN4PQ13434 485 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 TRPC3Q13507 836 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 WDTC1Q8N5D0 677 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 NAT8LQ8N9F0 302 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 RMDN2Q96LZ7 410 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 ACSS3Q9H6R3 686 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 NOP53Q9NZM5 478 aaKnown RBP14.37□□□□□ -0.11
COL6A3-207ENST00000433762 PHTF1Q9UMS5 762 aa14.37□□□□□ -0.11
COL6A3-207ENST00000433762 TRAFD1O14545 582 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 SPAG6O75602 509 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 FAM155BO75949 473 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 CST3P01034 146 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 TNNC2P02585 160 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 KRT15P19012 456 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 BRD2P25440 801 aaKnown RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 ELF1P32519 619 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 MSH2P43246 934 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 ASPAP45381 313 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 RASSF2P50749 326 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 CCNG1P51959 295 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 MYL6P60660 151 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 KCNJ2P63252 427 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 IRX3P78415 501 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 RNASELQ05823 741 aaKnown RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 MAPK6Q16659 721 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 ATP13A4Q4VNC1 1196 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 ZFYVE27Q5T4F4 411 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 KAZNQ674X7 775 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 MICALL2Q8IY33 904 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 GLIS1Q8NBF1 620 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 LRRC8CQ8TDW0 803 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 SH3TC2Q8TF17 1288 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 SEPT1Q8WYJ6 367 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 BCO2Q9BYV7 579 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 FRMD8Q9BZ67 464 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-207ENST00000433762 VPS37BQ9H9H4 285 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 SGK1O00141 431 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 LGR5O75473 907 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 EGFRP00533 1210 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 HOXC6P09630 235 aa14.36□□□□□ -0.11
COL6A3-207ENST00000433762 SLC8A3P57103 927 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms