RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CCDC13Q8IYE1 715 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ADGRF2Q8IZF7 708 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 MAIP1Q8WWC4 291 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ZBTB10Q96DT7 871 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 CORO1BQ9BR76 489 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TBK1Q9UHD2 729 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 AFDNP55196 1824 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 NCAM1P13591 858 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ALDH3A1P30838 453 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 DCAF6Q58WW2 860 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 IL31Q6EBC2 164 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 PPP1R2P3Q6NXS1 205 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 IRF2BP1Q8IU81 584 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF384Q8TF68 577 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 DDI1Q8WTU0 396 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TSC22D3Q99576 134 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 THG1LQ9NWX6 298 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 SPG21Q9NZD8 308 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 GGT7Q9UJ14 662 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 LUC7L3O95232 432 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ACSL3O95573 720 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 NAB2Q15742 525 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 FIGNQ5HY92 759 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 SH3D19Q5HYK7 790 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 ATAT1Q5SQI0 421 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 DARS2Q6PI48 645 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 MYLK4Q86YV6 388 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 SLC5A5Q92911 643 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.18□□□□□ -0.623e-9■■■■■ 78.5
TCOF1-204ENST00000427724 INPP4AQ96PE3 977 aaPredicted RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TRIM51Q9BSJ1 452 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 TRIM62Q9BVG3 475 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 DDX43Q9NXZ2 648 aaKnown RBP11.18□□□□□ -0.62
TCOF1-204ENST00000427724 RAB23Q9ULC3 237 aa11.18□□□□□ -0.62
TCOF1-204ENST00000427724 STRCQ7RTU9 1775 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 SGK1O00141 431 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 KIF3CO14782 793 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 EPHB6O15197 1021 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 SGPL1O95470 568 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GLI1P08151 1106 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 MDH1P40925 334 aaKnown RBP11.17□□□□□ -0.62
TCOF1-204ENST00000427724 CASP4P49662 377 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 CDH18Q13634 790 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 RASIP1Q5U651 963 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GJB7Q6PEY0 223 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 RBBP8NLQ8NC74 664 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-204ENST00000427724 C18orf8Q96DM3 657 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 TTC1Q99614 292 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 NIF3L1Q9GZT8 377 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 ASNSD1Q9NWL6 643 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 CLDND1Q9NY35 253 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 KLHL14Q9P2G3 628 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 NFASCO94856 1347 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 KLRC4O43908 158 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 FTLP02792 175 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-204ENST00000427724 PDHA1P08559 390 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 AXLP30530 894 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 CRYBB1P53674 252 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GLIS3Q8NEA6 775 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 FBXO22Q8NEZ5 403 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF507Q8TCN5 953 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 TRIB2Q92519 343 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GPR20Q99678 358 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 MLXIPLQ9NP71 852 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 RASGRF2O14827 1237 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 ATF2P15336 505 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GALCP54803 685 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 PPP2R2AP63151 447 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 IRX1P78414 480 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-204ENST00000427724 EPC2Q52LR7 807 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 PLPPR4Q7Z2D5 763 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 USP38Q8NB14 1042 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 GBP5Q96PP8 586 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 HEMGNQ9BXL5 484 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 IPPQ9Y573 584 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 PCDHB5Q9Y5E4 795 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 TOPAZ1Q8N9V7 1692 aa11.17□□□□□ -0.62
TCOF1-204ENST00000427724 MCF2LO15068 1137 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 CALB1P05937 261 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 MMEP08473 750 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 EFEMP1Q12805 493 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 TRIM32Q13049 653 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 ZNF235Q14590 738 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 MEA1Q16626 185 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 HHATQ5VTY9 493 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 ARHGEF18Q6ZSZ5 1173 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SLC7A14Q8TBB6 771 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 CASKIN2Q8WXE0 1202 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 DHX38Q92620 1227 aaKnown RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 POP1Q99575 1024 aaKnown RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 AGPAT3Q9NRZ7 376 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 KLHL8Q9P2G9 620 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-204ENST00000427724 SCINQ9Y6U3 715 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 TRIOBPQ9H2D6 2365 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 POC1B-GALNT4F8VUJ3 575 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 H0Y3Z8 333 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 FANCGO15287 622 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 DIAPH2O60879 1101 aa11.16□□□□□ -0.62
TCOF1-204ENST00000427724 LGR5O75473 907 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms