RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TUBGCP2Q9BSJ2 902 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 KBTBD4Q9NVX7 518 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 ANKFY1Q9P2R3 1169 aa10.29□□□□□ -0.76
USP54-205ENST00000424265 DENND3A2RUS2 1198 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 FAM86B1E9PN63 330 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 LYPLA2O95372 231 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 FAM86B2P0C5J1 330 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 RALGDSQ12967 914 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 GRB10Q13322 594 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 TMEM214Q6NUQ4 689 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 HAUS6Q7Z4H7 955 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 VPS50Q96JG6 964 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 NLRP4Q96MN2 994 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 MSTO1Q9BUK6 570 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 KCNK9Q9NPC2 374 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 BAZ2AQ9UIF9 1905 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 ARPC4-TTLL3A0A0A6YYG9 625 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 C17orf102A2RUQ5 167 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 CLDN3O15551 220 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 PSMD10O75832 226 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 RFX1P22670 979 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 BYSLQ13895 437 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 SPIDRQ14159 915 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 CELF3Q5SZQ8 465 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 CROCCP2Q86T23 111 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 SIAH1Q8IUQ4 282 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 GRAMD1CQ8IYS0 662 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 FAM129AQ9BZQ8 928 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 HMX1Q9NP08 348 aaPredicted RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 LRFN2Q9ULH4 789 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 TTLL3Q9Y4R7 772 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 STAMBPO95630 424 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 MYL7Q01449 175 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 MSLNQ13421 630 aaPredicted RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 MKRN4PQ13434 485 aaPredicted RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 PCBP1Q15365 356 aaKnown RBP eCLIP10.28□□□□□ -0.76
USP54-205ENST00000424265 PLPPR4Q7Z2D5 763 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 ABI1Q8IZP0 508 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 CYP4X1Q8N118 509 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 SLAIN1Q8ND83 568 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 CLEC4DQ8WXI8 215 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 MKNK1Q9BUB5 465 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 TPK1Q9H3S4 243 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 TTC34A8MYJ7 566 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 ZNF185O15231 689 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 SRGAP2CP0DJJ0 459 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 GFAPP14136 432 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 DRD4P21917 467 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 CHKAP35790 457 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 PPIDQ08752 370 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 CMPK2Q5EBM0 449 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 GOLM1Q8NBJ4 401 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 GIPC3Q8TF64 312 aa10.28□□□□□ -0.76
USP54-205ENST00000424265 HNRNPABQ99729 332 aaKnown RBP10.28□□□□□ -0.76
USP54-205ENST00000424265 SMIM31A0A1B0GVY4 71 aa10.27□□□□□ -0.76
USP54-205ENST00000424265 SLURP2P0DP57 97 aa10.27□□□□□ -0.76
USP54-205ENST00000424265 EXOC3L4Q17RC7 722 aa10.27□□□□□ -0.76
USP54-205ENST00000424265 NT5C1BQ96P26 610 aa10.27□□□□□ -0.76
USP54-205ENST00000424265 FAM49AQ9H0Q0 323 aaPredicted RBP10.27□□□□□ -0.76
USP54-205ENST00000424265 ARL2BPQ9Y2Y0 163 aa10.27□□□□□ -0.76
USP54-205ENST00000424265 RBMX2Q9Y388 322 aaKnown RBP10.27□□□□□ -0.76
USP54-205ENST00000424265 SYCE1LA8MT33 242 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 LPXNO60711 386 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 PPP1R11O60927 126 aaPredicted RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 CNOT3O75175 753 aaKnown RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 NAMPTP43490 491 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 CNTN2Q02246 1040 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 WASHC2DQ5SRD0 308 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 SNX30Q5VWJ9 437 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 TAF2Q6P1X5 1199 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 LRRC34Q8IZ02 419 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 PIP4K2CQ8TBX8 421 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 NMRK1Q9NWW6 199 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 ATPIF1Q9UII2 106 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 HMGCRP04035 888 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 NR3C1P04150 777 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 CHN1P15882 459 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 MFAP3P55082 362 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 RAPGEF1Q13905 1077 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 SHROOM1Q2M3G4 852 aaPredicted RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 SPRED3Q2MJR0 410 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 TJAP1Q5JTD0 557 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 RHPN2Q8IUC4 686 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 CD302Q8IX05 232 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 MBOAT7Q96N66 472 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 REEP2Q9BRK0 252 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 TRAF3IP3Q9Y228 551 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 COL1A2P08123 1366 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 NAA20P61599 178 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 C6orf118Q5T5N4 469 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 TWF2Q6IBS0 349 aaKnown RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 FRMD5Q7Z6J6 570 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 KLHL7Q8IXQ5 586 aa10.27□□□□□ -0.77
USP54-205ENST00000424265 DDX50Q9BQ39 737 aaKnown RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 MTIF3Q9H2K0 278 aaKnown RBP10.27□□□□□ -0.77
USP54-205ENST00000424265 MYMKA6NI61 221 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 CSPG5O95196 566 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 NDUFA10O95299 355 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ESRRBO95718 433 aa10.26□□□□□ -0.77
USP54-205ENST00000424265 ALADP13716 330 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms