RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 TFR2Q9UP52 801 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 MYH10P35580 1976 aa18.17■□□□□ 0.5
CCDC28B-202ENST00000421922 RCCD1A6NED2 376 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 H0YGN5 161 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 O00370 1275 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 SYN3O14994 580 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 MICAL2O94851 1124 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 ITGB1P05556 798 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 MYBL1P10243 752 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 TNNT1P13805 278 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 ACAT1P24752 427 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 LMO2P25791 158 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 ARHGAP25P42331 645 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 BCAR1P56945 870 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 SLC8A3P57103 927 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 GNG11P61952 73 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 GPC5P78333 572 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 TSPY1Q01534 308 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 CENPCQ03188 943 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 YWHAHQ04917 246 aaPredicted RBP18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 CRYBG2Q8N1P7 616 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 C1orf131Q8NDD1 294 aaKnown RBP18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 MED10Q9BTT4 135 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 DPEP3Q9H4B8 488 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 MYO1AQ9UBC5 1043 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 TSPAN16Q9UKR8 245 aa18.16■□□□□ 0.5
CCDC28B-202ENST00000421922 A0A0U1RQJ8 604 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 F8W810 466 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 GABRDO14764 452 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 CALB1P05937 261 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 GALTP07902 379 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 UNGP13051 313 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 LAG3P18627 525 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 IGFBP6P24592 240 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ADORA2BP29275 332 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 PSMC1P62191 440 aaKnown RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 TMEM240Q5SV17 173 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 DENND1BQ6P3S1 775 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 LCLAT1Q6UWP7 414 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 DNAAF5Q86Y56 855 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 C12orf29Q8N999 325 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 IPO4Q8TEX9 1081 aaKnown RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ATRIPQ8WXE1 791 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF592Q92610 1267 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF558Q96NG5 402 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 LHX5Q9H2C1 402 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ADAM22Q9P0K1 906 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 HCSTQ9UBK5 93 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 SLC4A7Q9Y6M7 1214 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 PTPRSQ13332 1948 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 NCANO14594 1321 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 BTNL10A8MVZ5 291 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 HCRTO43612 131 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 CFHP08603 1231 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 PTPN1P18031 435 aaKnown RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 SNX16P57768 344 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 MDH1BQ5I0G3 518 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF569Q5MCW4 686 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 PPP1R26Q5T8A7 1209 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 FAM171A1Q5VUB5 890 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ARHGAP17Q68EM7 881 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 FUT10Q6P4F1 479 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 CD300LGQ6UXG3 332 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 NYAP1Q6ZVC0 841 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 TMCO2Q7Z6W1 182 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ERICH1Q86X53 443 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 CEP57Q86XR8 500 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 RHOT2Q8IXI1 618 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 RNF10Q8N5U6 811 aaKnown RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 RFFLQ8WZ73 363 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ZNF689Q96CS4 500 aaPredicted RBP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 SLC9A7Q96T83 725 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 ZSWIM1Q9BR11 485 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 C11orf70Q9BRQ4 267 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 MIS12Q9H081 205 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 THAP2Q9H0W7 228 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 AAASQ9NRG9 546 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 CTTNBP2NLQ9P2B4 639 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 NR2E3Q9Y5X4 410 aa18.15■□□□□ 0.5
CCDC28B-202ENST00000421922 A0A0A6YYK5 440 aaPredicted RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 NT5C1B-RDH14C9J2C7 533 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 SETSIPP0DME0 302 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 CCDC130P13994 396 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 BCAT1P54687 386 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 ETF1P62495 437 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 C1QBPQ07021 282 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 MAPRE1Q15691 268 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 ZNF280DQ6N043 979 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 C16orf59Q7L2K0 433 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 PHF13Q86YI8 300 aaPredicted RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 MCOLN2Q8IZK6 566 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 VCPIP1Q96JH7 1222 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 ACBD6Q9BR61 282 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 MARCH5Q9NX47 278 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 CNOT8Q9UFF9 292 aaKnown RBP18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 GTF3C4Q9UKN8 822 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 STRIP2Q9ULQ0 834 aa18.14■□□□□ 0.49
CCDC28B-202ENST00000421922 PAXBP1Q9Y5B6 917 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms