RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DONSONQ9NYP3 566 aa8.86□□□□□ -0.99
USP54-203ENST00000418501 TFR2Q9UP52 801 aa8.86□□□□□ -0.99
USP54-203ENST00000418501 SMIM28A0A1B0GU29 152 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 DCDC2CA8MYV0 355 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ATP5DP30049 168 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ACLYP53396 1101 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ARHGAP17Q68EM7 881 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 POLNQ7Z5Q5 900 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 KATNAL2Q8IYT4 538 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ARHGEF26Q96DR7 871 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 EPB41L5Q9HCM4 733 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 OSGEPQ9NPF4 335 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 CYB561D2O14569 222 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 CAPN9O14815 690 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ATP2A2P16615 1042 aaKnown RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 ARL13BQ3SXY8 428 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 C4orf22Q6V702 233 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 CCNI2Q6ZMN8 369 aaPredicted RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 PCGF5Q86SE9 256 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 SLC13A5Q86YT5 568 aaPredicted RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 CEP120Q8N960 986 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 KCTD6Q8NC69 237 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 CNPY3Q9BT09 278 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 HAPLN2Q9GZV7 340 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ASIC3Q9UHC3 531 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 POLIQ9UNA4 740 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 GOLGA6BA6NDN3 693 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 GOLGA8KD6RF30 607 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ZNF185O15231 689 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 MICAL2O94851 1124 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 IVLP07476 585 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ATF2P15336 505 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ZNF135P52742 658 aaPredicted RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 EIF3BP55884 814 aaKnown RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 MAMLD1Q13495 774 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 PPP1R21Q6ZMI0 780 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ATL2Q8NHH9 583 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 DDX1Q92499 740 aaKnown RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 COLEC11Q9BWP8 271 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 TSPYL2Q9H2G4 693 aaPredicted RBP8.85□□□□□ -0.99
USP54-203ENST00000418501 ABCB6Q9NP58 842 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 STXBP5LQ9Y2K9 1186 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 PTCH2Q9Y6C5 1203 aa8.85□□□□□ -0.99
USP54-203ENST00000418501 ZNF623O75123 536 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 CSDE1O75534 798 aaKnown RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 IBSPP21815 317 aaPredicted RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 FGFR4P22455 802 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 WARSP23381 471 aaKnown RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 LRPAP1P30533 357 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 PDK2Q15119 407 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 FAM71BQ8TC56 605 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 MCEEQ96PE7 176 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 TAS2R14Q9NYV8 317 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 EHD2Q9NZN4 543 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 GABRQQ9UN88 632 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP54-203ENST00000418501 EFR3BQ9Y2G0 817 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 LRRD1A4D1F6 860 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 INHAP05111 366 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 FAM200BP0CF97 657 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 YY1P25490 414 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 MTA1Q13330 715 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ARID3AQ99856 593 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 XYLT2Q9H1B5 865 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 SMYD3Q9H7B4 428 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 HAUS2Q9NVX0 235 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 CDH9Q9ULB4 789 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 PACSIN2Q9UNF0 486 aaPredicted RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 TRIM17Q9Y577 477 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 CFAP69A5D8W1 941 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 MCF2LO15068 1137 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 FAM189A1O60320 539 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 AOC2O75106 756 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ARL4AP40617 200 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 RAD23BP54727 409 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 GSCP56915 257 aaPredicted RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 SPDYCQ5MJ68 293 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ANKRD52Q8NB46 1076 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 KLHDC9Q8NEP7 349 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 RSAD2Q8WXG1 361 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 RBM12Q9NTZ6 932 aaKnown RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 TSPAN16Q9UKR8 245 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 PCDHB7Q9Y5E2 793 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 A0A0U1RQJ8 604 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ADAM17P78536 824 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 DCLRE1AQ6PJP8 1040 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 FAM228AQ86W67 206 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ARHGAP18Q8N392 663 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 UBR7Q8N806 425 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 NIPA2Q8N8Q9 360 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 ATRIPQ8WXE1 791 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 TRAIPQ9BWF2 469 aa8.84□□□□□ -0.99
USP54-203ENST00000418501 SENP6Q9GZR1 1112 aaPredicted RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 NXF3Q9H4D5 531 aaKnown RBP8.84□□□□□ -0.99
USP54-203ENST00000418501 H7C4K7 107 aa8.83□□□□□ -1
USP54-203ENST00000418501 GLI1P08151 1106 aa8.83□□□□□ -1
USP54-203ENST00000418501 SELPP16109 830 aa8.83□□□□□ -1
USP54-203ENST00000418501 AKAP5P24588 427 aa8.83□□□□□ -1
USP54-203ENST00000418501 GDF6Q6KF10 455 aaPredicted RBP8.83□□□□□ -1
USP54-203ENST00000418501 LRRC1Q9BTT6 524 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms