RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 C10orf76Q5T2E6 689 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 FAM109BQ6ICB4 259 aaPredicted RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 C12orf29Q8N999 325 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 MYCBPAPQ8TBZ2 947 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 PIK3R5Q8WYR1 880 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 SAMD11Q96NU1 681 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 PCDHB18PQ96TA0 734 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 HNRNPABQ99729 332 aaKnown RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 SYT15Q9BQS2 421 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 HERC2P3Q9BVR0 1158 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 ZNF518BQ9C0D4 1074 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 CRTAC1Q9NQ79 661 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 PUF60Q9UHX1 559 aaKnown RBP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 NAGPAQ9UK23 515 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.14■□□□□ 0.01
SF3B1-204ENST00000414963 LZTS1Q9Y250 596 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 BACE2Q9Y5Z0 518 aa15.14■□□□□ 0.01
SF3B1-204ENST00000414963 ZNF263O14978 683 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ATP2C2O75185 946 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ACAT1P24752 427 aaKnown RBP15.13■□□□□ 0.01
SF3B1-204ENST00000414963 KRT83P78385 493 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 TSPY1Q01534 308 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 GFPT1Q06210 699 aaPredicted RBP15.13■□□□□ 0.01
SF3B1-204ENST00000414963 SPA17Q15506 151 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 MAPRE1Q15691 268 aaKnown RBP15.13■□□□□ 0.01
SF3B1-204ENST00000414963 CLEC16AQ2KHT3 1053 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 PKDCCQ504Y2 493 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 RTP2Q5QGT7 225 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 PPP1R26Q5T8A7 1209 aaPredicted RBP15.13■□□□□ 0.01
SF3B1-204ENST00000414963 TAF3Q5VWG9 929 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ZNF280DQ6N043 979 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 PPP1R2P3Q6NXS1 205 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ALKBH5Q6P6C2 394 aaKnown RBP15.13■□□□□ 0.01
SF3B1-204ENST00000414963 TOGARAM2Q6ZUX3 1019 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 CEP57Q86XR8 500 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 OR10T2Q8NGX3 314 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 CYFIP2Q96F07 1278 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ZCWPW1Q9H0M4 648 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ISCUQ9H1K1 167 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 PRO3102Q9H379 93 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 KCND1Q9NSA2 647 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 SPTLC3Q9NUV7 552 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 PYCARDQ9ULZ3 195 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ZKSCAN5Q9Y2L8 839 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 ADGRG1Q9Y653 693 aa15.13■□□□□ 0.01
SF3B1-204ENST00000414963 MYBPHLA2RUH7 354 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 MICAL2O94851 1124 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 IPO7O95373 1038 aaKnown RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 CFHP08603 1231 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 UNGP13051 313 aaPredicted RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 MYOGP15173 224 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 PSMC1P62191 440 aaKnown RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 UBE3AQ05086 875 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 CTXN3Q4LDR2 81 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 PAQR9Q6ZVX9 377 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 PALB2Q86YC2 1186 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 DCP1BQ8IZD4 617 aaKnown RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 FUKQ8N0W3 1084 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 WDTC1Q8N5D0 677 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 ANKRD52Q8NB46 1076 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 KLHL23Q8NBE8 558 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 TMEM35BQ8NCS4 154 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 LPIN3Q9BQK8 851 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 MTRRQ9UBK8 725 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 REXO2Q9Y3B8 237 aaKnown RBP15.12■□□□□ 0.01
SF3B1-204ENST00000414963 TSC2P49815 1807 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 ATP8B3O60423 1300 aa15.12■□□□□ 0.01
SF3B1-204ENST00000414963 LILRB3O75022 631 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 RTN2O75298 545 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 CA3P07451 260 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 SETSIPP0DME0 302 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 GPD2P43304 727 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 GLUD2P49448 558 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 ERVK-21P61565 698 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 NOMO3P69849 1222 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 CENPCQ03188 943 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 SMARCB1Q12824 385 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 RAB30Q15771 203 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 MDH1BQ5I0G3 518 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 CCDC122Q5T0U0 273 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 SLC8B1Q6J4K2 584 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 ACAD10Q6JQN1 1059 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 KIAA1841Q6NSI8 718 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 DENND1BQ6P3S1 775 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 ZNF662Q6ZS27 426 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 LRRTM3Q86VH5 581 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 TDHQ8IZJ6 230 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 VPS52Q8N1B4 723 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 KIAA1524Q8TCG1 905 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 STK32AQ8WU08 396 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 RIN2Q8WYP3 895 aaPredicted RBP15.11■□□□□ 0.01
SF3B1-204ENST00000414963 PCED1BQ96HM7 432 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 B3GALT6Q96L58 329 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 TGS1Q96RS0 853 aaKnown RBP15.11■□□□□ 0.01
SF3B1-204ENST00000414963 B3GNT5Q9BYG0 378 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 PDCL3Q9H2J4 239 aa15.11■□□□□ 0.01
SF3B1-204ENST00000414963 LUC7LQ9NQ29 371 aaKnown RBP15.11■□□□□ 0.01
SF3B1-204ENST00000414963 FAM49BQ9NUQ9 324 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms