RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-205	ENST00000414879	KSR1	Q8IVT5	923 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	APBB2	Q92870	758 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	RMDN1	Q96DB5	314 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	RBM15	Q96T37	977 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CISH	Q9NSE2	258 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	PACSIN2	Q9UNF0	486 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	TNFSF13B	Q9Y275	285 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CCDC22	O60826	627 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	UROD	P06132	367 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	MDM2	Q00987	491 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	ZKSCAN8	Q15776	578 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	TBCC	Q15814	346 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	LY6K	Q17RY6	165 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CLEC16A	Q2KHT3	1053 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	OR6P1	Q8NGX9	317 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	ZBTB9	Q96C00	473 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	UPF3A	Q9H1J1	476 aa	Known RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	VPS11	Q9H270	941 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	METTL5	Q9NRN9	209 aa	Known RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879		A0A087X0T9	212 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CST8	O60676	142 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	MAF	O75444	373 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	ALDH2	P05091	517 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	POLB	P06746	335 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	FAM228B	P0C875	321 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	NCAM1	P13591	858 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	SPR	P35270	261 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	HSPA9	P38646	679 aa	Known RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CASP4	P49662	377 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	BMT2	Q1RMZ1	405 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	TEDDM1	Q5T9Z0	273 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	PAPD7	Q5XG87	772 aa	Known RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	ZNF557	Q8N988	423 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CYFIP2	Q96F07	1278 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	CAMKK2	Q96RR4	588 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	LRRC1	Q9BTT6	524 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	RAB6B	Q9NRW1	208 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	NEU2	Q9Y3R4	380 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	LAMB4	A4D0S4	1761 aa		12.51	□□□□□ -0.41
PTPRF-205	ENST00000414879	GMNC	A6NCL1	334 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	IGF2BP3	O00425	579 aa	Known RBP eCLIP	12.5	□□□□□ -0.41	1e-6	■■□□□ 14
PTPRF-205	ENST00000414879	GEM	P55040	296 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	MAGOH	P61326	146 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TAS1R2	Q8TE23	839 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	SLC35C1	Q96A29	364 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TTC17	Q96AE7	1141 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	DCUN1D1	Q96GG9	259 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	CASZ1	Q86V15	1759 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TMEM247	A6NEH6	219 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	CFAP99	D6REC4	459 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	COIL	P38432	576 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	GGCX	P38435	758 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PTGER2	P43116	358 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TSTA3	Q13630	321 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PTK6	Q13882	451 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	C12orf56	Q8IXR9	622 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PDCD6IP	Q8WUM4	868 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	MRPS31	Q92665	395 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PI4K2A	Q9BTU6	479 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	MMTAG2	Q9BU76	263 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	WDCP	Q9H6R7	721 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	ZC3H7B	Q9UGR2	993 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	SIPA1L3	O60292	1781 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	KLRG2	A4D1S0	409 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	BNIP3L	O60238	219 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PYGL	P06737	847 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	EIF4B	P23588	611 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	PSMC6	P62333	389 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	GRIK5	Q16478	980 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	FAM110C	Q1W6H9	321 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TFDP3	Q5H9I0	405 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TBC1D19	Q8N5T2	526 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	FOPNL	Q96NB1	174 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	FTHL17	Q9BXU8	183 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	GOLPH3	Q9H4A6	298 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	AAR2	Q9Y312	384 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	IRF6	O14896	467 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	VTN	P04004	478 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	RALB	P11234	206 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	GEMIN4	P57678	1058 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	SNCB	Q16143	134 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	ACCSL	Q4AC99	568 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	EARS2	Q5JPH6	523 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	CHSY1	Q86X52	802 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	NUDCD3	Q8IVD9	361 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TFB1M	Q8WVM0	346 aa	Known RBP	12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	ULK4	Q96C45	1275 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	L2HGDH	Q9H9P8	463 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	TRPM5	Q9NZQ8	1165 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	LTBP3	Q9NS15	1303 aa		12.5	□□□□□ -0.41
PTPRF-205	ENST00000414879	KDM1A	O60341	852 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	HMGCR	P04035	888 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	IFNA8	P32881	189 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	HDAC4	P56524	1084 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	ENPEP	Q07075	957 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	NFIL3	Q16649	462 aa		12.49	□□□□□ -0.41
PTPRF-205	ENST00000414879	EFL1	Q7Z2Z2	1120 aa	Known RBP	12.49	□□□□□ -0.41

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