RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 STK38LQ9Y2H1 464 aa6.04□□□□□ -1.44
CCDC88A-203ENST00000412148 RALGAPA2Q2PPJ7 1873 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 LRRD1A4D1F6 860 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 C3orf70A6NLC5 250 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 PDLIM1O00151 329 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GSC2O15499 205 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GCLCP48506 637 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ARSEP51690 589 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CCNHP51946 323 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 RAD23BP54727 409 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ARL4CP56559 192 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GPX6P59796 221 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ROR2Q01974 943 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 AP1B1Q10567 949 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TCP10Q12799 353 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KPNB1Q14974 876 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 HIF1AQ16665 826 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 FNDC1Q4ZHG4 1894 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 DAB2IPQ5VWQ8 1189 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 OR52E8Q6IFG1 317 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 NSMFQ6X4W1 530 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 BBS12Q6ZW61 710 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KIAA0825Q8IV33 1275 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GALNT15Q8N3T1 639 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 SUPT20HQ8NEM7 779 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 WDR90Q96KV7 1748 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CSRNP1Q96S65 589 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CGRRF1Q99675 332 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 STN1Q9H668 368 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TMEM134Q9H6X4 195 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GPAMQ9HCL2 828 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNK4Q9NYG8 393 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 COL20A1Q9P218 1284 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 PGAP2Q9UHJ9 254 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 HAO1Q9UJM8 370 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 DNPEPQ9ULA0 475 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 STRIP2Q9ULQ0 834 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TBC1D30Q9Y2I9 924 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ADGRA2Q96PE1 1338 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF236Q9UL36 1845 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GSTTP1A0A1W2PQM5 241 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 FAM196BA6NMK8 535 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF487B1APH4 448 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 NVLO15381 856 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TLR3O15455 904 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 HLA-DRAP01903 254 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 DLDP09622 509 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 RARBP10826 455 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 SKIP12755 728 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KRT5P13647 590 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TARSP26639 723 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CCNFP41002 786 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 SLC34A1Q06495 639 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNF252P-AS1Q0IIN9 211 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 PGM5Q15124 567 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 DOK7Q18PE1 504 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 TAF1BQ53T94 588 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 LVRNQ6Q4G3 990 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 C4orf22Q6V702 233 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KYAT3Q6YP21 454 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CYS1Q717R9 158 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ANO5Q75V66 913 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 NLRX1Q86UT6 975 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ARHGAP18Q8N392 663 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 FLAD1Q8NFF5 587 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 SYTL5Q8TDW5 730 aaPredicted RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 NCSTNQ92542 709 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 GATA6Q92908 595 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ATP6V0A1Q93050 837 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 RTP4Q96DX8 246 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 APOPT1Q96IL0 206 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 MIPEPQ99797 713 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 MAK16Q9BXY0 300 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 CADM1Q9BY67 442 aaKnown RBP6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 VPS33BQ9H267 617 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 LHX5Q9H2C1 402 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 MANSC1Q9H8J5 431 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 KCNK13Q9HB14 408 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ACP6Q9NPH0 428 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 IL1RAPL1Q9NZN1 696 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 PDP2Q9P2J9 529 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 ZNRF3Q9ULT6 936 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 PCDHA10Q9Y5I2 948 aa6.03□□□□□ -1.44
CCDC88A-203ENST00000412148 IQANK1A0A1B0GTG1 560 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 KLHL33A6NCF5 533 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CAPN14A8MX76 684 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TOM1O60784 492 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 TOMM70O94826 608 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 ENDOD1O94919 500 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 HAUS5O94927 633 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 VNN1O95497 513 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 CCNE2O96020 404 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT7P08729 469 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 FGFR1P11362 822 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 EPHB2P29323 1055 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 GNA15P30679 374 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 XIAPP98170 497 aa6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 HNRNPDQ14103 355 aaKnown RBP6.02□□□□□ -1.45
CCDC88A-203ENST00000412148 MAPK6Q16659 721 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms