RNA–Protein interactions for RNA: ENST00000409810.6

CHMP3-205, Transcript of charged multivesicular body protein 3, humanhuman

TSL 5

Gene CHMP3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-205ENST00000409810 PDZD4Q76G19 769 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 GET4Q7L5D6 327 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 LRRTM3Q86VH5 581 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ZDHHC14Q8IZN3 488 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 TTC39CQ8N584 583 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 FAM200AQ8TCP9 573 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 SLC35C1Q96A29 364 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 TNIP3Q96KP6 325 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 FAM124BQ9H5Z6 455 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 SMYD3Q9H7B4 428 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 CYP3A43Q9HB55 503 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 AVENQ9NQS1 362 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ASAH2Q9NR71 780 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ANO10Q9NW15 660 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 RAB20Q9NX57 234 aa11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ZFP37Q9Y6Q3 630 aaPredicted RBP11.65□□□□□ -0.54
CHMP3-205ENST00000409810 ZNF638Q14966 1978 aaKnown RBP11.65□□□□□ -0.55
CHMP3-205ENST00000409810 ATP8B3O60423 1300 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 C2CD4DB7Z1M9 353 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 PMM2O15305 246 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 VNN2O95498 520 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 FGF19O95750 216 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 PDGFRBP09619 1106 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 HAPLN1P10915 354 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 LMO2P25791 158 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 ASPAP45381 313 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 FMO5P49326 533 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 PSMC1P62191 440 aaKnown RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 RPL10AP62906 217 aaKnown RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 TAF12Q16514 161 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CFAP221Q4G0U5 840 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CBWD6Q4V339 395 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CBWD3Q5JTY5 395 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CBWD5Q5RIA9 395 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 SPOPLQ6IQ16 392 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 FAM171BQ6P995 826 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 UNC93AQ86WB7 457 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CREBRFQ8IUR6 639 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 MYCBPAPQ8TBZ2 947 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CNOT6LQ96LI5 555 aaKnown RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 CORO1BQ9BR76 489 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 PI4K2AQ9BTU6 479 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 BCO2Q9BYV7 579 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 THAP9Q9H5L6 903 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 DNMT3BQ9UBC3 853 aaKnown RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 MAGEC2Q9UBF1 373 aaPredicted RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 SLC27A5Q9Y2P5 690 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 COQ4Q9Y3A0 265 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 MRPS23Q9Y3D9 190 aaKnown RBP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.64□□□□□ -0.55
CHMP3-205ENST00000409810 GREB1Q4ZG55 1949 aa11.64□□□□□ -0.55
CHMP3-205ENST00000409810 MYBPHLA2RUH7 354 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 TRIM66O15016 1216 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 AFPP02771 609 aaKnown RBP11.63□□□□□ -0.55
CHMP3-205ENST00000409810 MAGEA11P43364 429 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 RAP1GAPP47736 663 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 YWHAEP62258 255 aaKnown RBP11.63□□□□□ -0.55
CHMP3-205ENST00000409810 CYP27A1Q02318 531 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 STX1AQ16623 288 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 VSTM1Q6UX27 236 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 TRIM59Q8IWR1 403 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 TTC9BQ8N6N2 239 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 B3GALNT2Q8NCR0 500 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 FEZF2Q8TBJ5 459 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 PSMG2Q969U7 264 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 MYLPFQ96A32 169 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 GCNAQ96QF7 691 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 PKMYT1Q99640 499 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 ELOVL4Q9GZR5 314 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 CRISPLD1Q9H336 500 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.63□□□□□ -0.55
CHMP3-205ENST00000409810 TMLHEQ9NVH6 421 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 HCFC1R1Q9NWW0 138 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 GTF3C4Q9UKN8 822 aa11.63□□□□□ -0.55
CHMP3-205ENST00000409810 OBSL1O75147 1896 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 HCRTO43612 131 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 MICAL2O94851 1124 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 CSH1P0DML2 217 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 CSH2P0DML3 217 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 ALADP13716 330 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 PRKCSHP14314 528 aaPredicted RBP11.62□□□□□ -0.55
CHMP3-205ENST00000409810 PTPN1P18031 435 aaKnown RBP11.62□□□□□ -0.55
CHMP3-205ENST00000409810 TBXAS1P24557 533 aaPredicted RBP11.62□□□□□ -0.55
CHMP3-205ENST00000409810 ANXA13P27216 316 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 EPHA5P54756 1037 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 CDH8P55286 799 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 NTHL1P78549 312 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 INCA1Q0VD86 236 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 KCNH2Q12809 1159 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 MDH1BQ5I0G3 518 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 DNAJB7Q7Z6W7 309 aaPredicted RBP11.62□□□□□ -0.55
CHMP3-205ENST00000409810 RNF135Q8IUD6 432 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 SEMA4DQ92854 862 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 NXPE3Q969Y0 559 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 PCED1BQ96HM7 432 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 CEP295NLQ96MC4 621 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 NT5C1BQ96P26 610 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 LPIN3Q9BQK8 851 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 SDCBP2Q9H190 292 aa11.62□□□□□ -0.55
CHMP3-205ENST00000409810 DNAJC25Q9H1X3 360 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms