RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 ZNF268Q14587 947 aaPredicted RBP20.04■□□□□ 0.8
USP39-202ENST00000409025 ZDHHC14Q8IZN3 488 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 PCSK9Q8NBP7 692 aaKnown RBP20.04■□□□□ 0.8
USP39-202ENST00000409025 WNT8BQ93098 351 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 SENP6Q9GZR1 1112 aaPredicted RBP20.04■□□□□ 0.8
USP39-202ENST00000409025 CHST12Q9NRB3 414 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 FAM114A2Q9NRY5 505 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 PCYOX1Q9UHG3 505 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 ZNF252P-AS1Q0IIN9 211 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 NFX1Q12986 1120 aaKnown RBP20.04■□□□□ 0.8
USP39-202ENST00000409025 PDCLQ13371 301 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 SIX1Q15475 284 aaPredicted RBP20.04■□□□□ 0.8
USP39-202ENST00000409025 HSP90B2PQ58FF3 399 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 UNC93AQ86WB7 457 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 XYLT1Q86Y38 959 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 CCDC50Q8IVM0 306 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 NIPA2Q8N8Q9 360 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 UBA3Q8TBC4 463 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 SEC14L1Q92503 715 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 SRRDQ9UH36 339 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 TSPAN16Q9UKR8 245 aa20.04■□□□□ 0.8
USP39-202ENST00000409025 CHRNA1P02708 482 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 ERBB2P04626 1255 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 GJC1P36383 396 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 CETN2P41208 172 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 GABRB2P47870 512 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 OGDHQ02218 1023 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 CCSAPQ6IQ19 270 aaPredicted RBP20.03■□□□□ 0.8
USP39-202ENST00000409025 CCDC137Q6PK04 289 aaKnown RBP20.03■□□□□ 0.8
USP39-202ENST00000409025 HACE1Q8IYU2 909 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 C12orf50Q8NA57 414 aaPredicted RBP20.03■□□□□ 0.8
USP39-202ENST00000409025 ARRDC4Q8NCT1 418 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 OR6B3Q8NGW1 331 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 EXD1Q8NHP7 514 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 IPO4Q8TEX9 1081 aaKnown RBP20.03■□□□□ 0.8
USP39-202ENST00000409025 TRIM51Q9BSJ1 452 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 MIS12Q9H081 205 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 ST7Q9NRC1 585 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 TJP2Q9UDY2 1190 aa20.03■□□□□ 0.8
USP39-202ENST00000409025 KPNA7A9QM74 516 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 DAPK3O43293 454 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 FAM153BP0C7A2 387 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 COILP38432 576 aaPredicted RBP20.02■□□□□ 0.8
USP39-202ENST00000409025 AARSP49588 968 aaKnown RBP eCLIP20.02■□□□□ 0.8
USP39-202ENST00000409025 TAF6P49848 677 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 MGAT3Q09327 533 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 PTGISQ16647 500 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 SOWAHAQ2M3V2 549 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 FAM153CQ494X1 144 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 SV2CQ496J9 727 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 LRRC38Q5VT99 294 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 ACOT1Q86TX2 421 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 DDX42Q86XP3 938 aaKnown RBP eCLIP20.02■□□□□ 0.8
USP39-202ENST00000409025 JAMLQ86YT9 394 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 ERP44Q9BS26 406 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 CFHR5Q9BXR6 569 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 GDAP2Q9NXN4 497 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 FAM153AQ9UHL3 310 aa20.02■□□□□ 0.8
USP39-202ENST00000409025 F8VP50 259 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 H3BQF6 201 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 GPR182O15218 404 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 RFC1P35251 1148 aaPredicted RBP20.02■□□□□ 0.79
USP39-202ENST00000409025 PTGIRP43119 386 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 FNTAP49354 379 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 GOLGA7BQ2TAP0 167 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 C12orf29Q8N999 325 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 CD99L2Q8TCZ2 262 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 DNAI2Q9GZS0 605 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 DPH5Q9H2P9 285 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 LRRC19Q9H756 370 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 MED4Q9NPJ6 270 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 FAM105AQ9NUU6 356 aa20.02■□□□□ 0.79
USP39-202ENST00000409025 PODXLO00592 558 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 TRPA1O75762 1119 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 PSMA2P25787 234 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 ECHS1P30084 290 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 THPOP40225 353 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 SOX4Q06945 474 aaPredicted RBP20.01■□□□□ 0.79
USP39-202ENST00000409025 LLGL1Q15334 1064 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 TTC27Q6P3X3 843 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 CCDC105Q8IYK2 499 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 RCOR2Q8IZ40 523 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 FNIP1Q8TF40 1166 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 MCRS1Q96EZ8 462 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 RBM41Q96IZ5 413 aaKnown RBP20.01■□□□□ 0.79
USP39-202ENST00000409025 GOLGA2P5Q9HBQ8 144 aa20.01■□□□□ 0.79
USP39-202ENST00000409025 METTL5Q9NRN9 209 aaKnown RBP20.01■□□□□ 0.79
USP39-202ENST00000409025 DDX20Q9UHI6 824 aaKnown RBP20.01■□□□□ 0.79
USP39-202ENST00000409025 GOLGA6BA6NDN3 693 aa20■□□□□ 0.79
USP39-202ENST00000409025 A8MXQ7 604 aa20■□□□□ 0.79
USP39-202ENST00000409025 ZFYVE27Q5T4F4 411 aa20■□□□□ 0.79
USP39-202ENST00000409025 PPP1R26Q5T8A7 1209 aaPredicted RBP20■□□□□ 0.79
USP39-202ENST00000409025 DUPD1Q68J44 220 aa20■□□□□ 0.79
USP39-202ENST00000409025 RNF180Q86T96 592 aa20■□□□□ 0.79
USP39-202ENST00000409025 MREGQ8N565 214 aa20■□□□□ 0.79
USP39-202ENST00000409025 JOSD2Q8TAC2 188 aa20■□□□□ 0.79
USP39-202ENST00000409025 TRIM31Q9BZY9 425 aa20■□□□□ 0.79
USP39-202ENST00000409025 CREBZFQ9NS37 354 aa20■□□□□ 0.79
USP39-202ENST00000409025 HESX1Q9UBX0 185 aa20■□□□□ 0.79
USP39-202ENST00000409025 GRIN2DO15399 1336 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms