RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TMEM175Q9BSA9 504 aa9.9□□□□□ -0.82
VPS53-203ENST00000401468 HERC2P3Q9BVR0 1158 aa9.9□□□□□ -0.82
VPS53-203ENST00000401468 MRPL17Q9NRX2 175 aaKnown RBP9.9□□□□□ -0.82
VPS53-203ENST00000401468 LIMA1Q9UHB6 759 aaKnown RBP9.9□□□□□ -0.82
VPS53-203ENST00000401468 UBQLN1Q9UMX0 589 aaKnown RBP9.9□□□□□ -0.82
VPS53-203ENST00000401468 COQ4Q9Y3A0 265 aa9.9□□□□□ -0.82
VPS53-203ENST00000401468 WASF2Q9Y6W5 498 aa9.9□□□□□ -0.82
VPS53-203ENST00000401468 CACNA1IQ9P0X4 2223 aa9.9□□□□□ -0.83
VPS53-203ENST00000401468 PTPRDP23468 1912 aa9.9□□□□□ -0.83
VPS53-203ENST00000401468 ZFHX4Q86UP3 3567 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 PATJQ8NI35 1801 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 PIRO00625 290 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 P4HA2O15460 535 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 SIAH2O43255 324 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 XPOTO43592 962 aaKnown RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 N4BP1O75113 896 aaKnown RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 STAU1O95793 577 aaKnown RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 SOD2P04179 222 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 KRT13P13646 458 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 RPL9P32969 192 aaKnown RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 NTHL1P78549 312 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 SPAG1Q07617 926 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 PPP3CAQ08209 521 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 PTPN21Q16825 1174 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 UPP1Q16831 310 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 DUOXA2Q1HG44 320 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 RTP2Q5QGT7 225 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 TDRD10Q5VZ19 366 aaKnown RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 KIAA1841Q6NSI8 718 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 FUT10Q6P4F1 479 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 CD300LGQ6UXG3 332 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 GAS2L3Q86XJ1 694 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 C1orf127Q8N9H9 656 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 PRSS33Q8NF86 280 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 OR5B17Q8NGF7 314 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 BAP1Q92560 729 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 C18orf25Q96B23 403 aaPredicted RBP9.89□□□□□ -0.83
VPS53-203ENST00000401468 VRTNQ9H8Y1 702 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 TMEM8AQ9HCN3 771 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 SIX4Q9UIU6 781 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 ITGA11Q9UKX5 1188 aa9.89□□□□□ -0.83
VPS53-203ENST00000401468 EPG5Q9HCE0 2579 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CCDC195A0A1B0GUA6 201 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 GTPBP10A4D1E9 387 aaKnown RBP9.88□□□□□ -0.83
VPS53-203ENST00000401468 KCNJ18B7U540 433 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 SPTLC1O15269 473 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 NARSO43776 548 aaKnown RBP9.88□□□□□ -0.83
VPS53-203ENST00000401468 STX10O60499 249 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 LILRB3O75022 631 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 TADA2AO75478 443 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 VNN1O95497 513 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 PAX3P23760 479 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CTHP32929 405 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 BRCC3P46736 316 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 AARSP49588 968 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS53-203ENST00000401468 KCNJ12Q14500 433 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 MAN2A1Q16706 1144 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CBWD6Q4V339 395 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CBWD3Q5JTY5 395 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CBWD5Q5RIA9 395 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 FAM171A1Q5VUB5 890 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 KIAA0319Q5VV43 1072 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 SV2AQ7L0J3 742 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 LIMS2Q7Z4I7 341 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 LUZP1Q86V48 1076 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 RNF168Q8IYW5 571 aaPredicted RBP9.88□□□□□ -0.83
VPS53-203ENST00000401468 LRRC52Q8N7C0 313 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 TDRD5Q8NAT2 981 aaKnown RBP9.88□□□□□ -0.83
VPS53-203ENST00000401468 BEST2Q8NFU1 509 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 CACTINQ8WUQ7 758 aaKnown RBP9.88□□□□□ -0.83
VPS53-203ENST00000401468 CCDC127Q96BQ5 260 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 ASIC4Q96FT7 647 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 FNBP1Q96RU3 617 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 TUBGCP2Q9BSJ2 902 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 EMILIN2Q9BXX0 1053 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 MTMR12Q9C0I1 747 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 DPP3Q9NY33 737 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 TUBGCP4Q9UGJ1 667 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 ADAM28Q9UKQ2 775 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 RALGAPA1Q6GYQ0 2036 aa9.88□□□□□ -0.83
VPS53-203ENST00000401468 FANCMQ8IYD8 2048 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 CFAP99D6REC4 459 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 TGM5O43548 720 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 TNNC2P02585 160 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 TRIM49P0CI25 452 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 TRIM49CP0CI26 452 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 ATP1A3P13637 1013 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 SNRPBP14678 240 aaKnown RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 HOXB8P17481 243 aaPredicted RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 TNNI1P19237 187 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 GBP2P32456 591 aaPredicted RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 MTHFRP42898 656 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 FMO5P49326 533 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 CLCNKBP51801 687 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 BMS1Q14692 1282 aaKnown RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 KRT31Q15323 416 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 TPD52L1Q16890 204 aaPredicted RBP9.87□□□□□ -0.83
VPS53-203ENST00000401468 CCDC40Q4G0X9 1142 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 ATAT1Q5SQI0 421 aa9.87□□□□□ -0.83
VPS53-203ENST00000401468 C9orf57Q5W0N0 161 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms