RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MSX2P35548 267 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MAP2K6P52564 334 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SESN2P58004 480 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MRPS9P82933 396 aaKnown RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 CD83Q01151 205 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SCARB2Q14108 478 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 EFR3AQ14156 821 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SMC1AQ14683 1233 aaKnown RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MUM1Q2TAK8 710 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 C3orf36Q3SXR2 165 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 CT83Q5H943 113 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 CCDC158Q5M9N0 1113 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MOGAT3Q86VF5 341 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 NOSTRINQ8IVI9 506 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 D2HGDHQ8N465 521 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 TSPYL6Q8N831 410 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 OR8H1Q8NGG4 311 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 TDRD7Q8NHU6 1098 aaKnown RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 IL31RAQ8NI17 732 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MUL1Q969V5 352 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 EAF2Q96CJ1 260 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 MSLNLQ96KJ4 702 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 GBP4Q96PP9 640 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 PLEKHG4BQ96PX9 1271 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 DHX36Q9H2U1 1008 aaKnown RBP4.61□□□□□ -1.67
HMGB1-204ENST00000399489 ABCF3Q9NUQ8 709 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 BTBD7Q9P203 1132 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 SLC39A10Q9ULF5 831 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 GPRASP1Q5JY77 1395 aa4.61□□□□□ -1.67
HMGB1-204ENST00000399489 A0A0B4J269 797 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PRAMEF22A3QJZ6 481 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PI4KAP2A4QPH2 592 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MYO1FO00160 1098 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 KCNK3O14649 394 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PHGDHO43175 533 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 HTATSF1O43719 755 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 RTN3O95197 1032 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ADRB2P07550 413 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MMEP08473 750 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ALOX15P16050 662 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ALOX12P18054 663 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 HOXD13P35453 343 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ACTN2P35609 894 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MAPK7Q13164 816 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TRPC3Q13507 836 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 GRM7Q14831 915 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 UGT8Q16880 541 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PITRM1Q5JRX3 1037 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TMEM200BQ69YZ2 307 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TANGO2Q6ICL3 276 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 Q6ZSN1 163 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 LARP4Q71RC2 724 aaKnown RBP eCLIP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 RASGRP2Q7LDG7 609 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 RPAINQ86UA6 219 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 SESTD1Q86VW0 696 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 C2CD5Q86YS7 1000 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZZZ3Q8IYH5 903 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TCP11L2Q8N4U5 519 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF808Q8N4W9 903 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TEX9Q8N6V9 391 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 FANCBQ8NB91 859 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZFPM2Q8WW38 1151 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 RTF1Q92541 710 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 LPPQ93052 612 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF566Q969W8 418 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ARHGAP39Q9C0H5 1083 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ABCG4Q9H172 646 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ZNF287Q9HBT7 754 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PLA2G3Q9NZ20 509 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ING1Q9UK53 422 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 OGDHLQ9ULD0 1010 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MAFFQ9ULX9 164 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PA2G4Q9UQ80 394 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 PMS2P1A4D2B8 440 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TRIM64CA6NLI5 447 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 AQP12BA6NM10 295 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 STARD3NLO95772 234 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 FTLP02792 175 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 APOA4P06727 396 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ADH4P08319 380 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ATP6V1B1P15313 513 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 APEX1P27695 318 aaKnown RBP4.6□□□□□ -1.67
HMGB1-204ENST00000399489 POLD2P49005 469 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 CCR5P51681 352 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 BECN1Q14457 450 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TRIM68Q6AZZ1 485 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 ERC1Q8IUD2 1116 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 HERC6Q8IVU3 1022 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 CEP57L1Q8IYX8 460 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 CARNMT1Q8N4J0 409 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 AMER2Q8N7J2 671 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MSANTD4Q8NCY6 345 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 SHCBP1Q8NEM2 672 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 OR14K1Q8NGZ2 314 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MGARPQ8TDB4 240 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 TSPEARQ8WU66 669 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 AUTS2Q8WXX7 1259 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 RGMAQ96B86 450 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 HIC2Q96JB3 615 aa4.6□□□□□ -1.67
HMGB1-204ENST00000399489 MPHOSPH9Q99550 1183 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms