RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 MAN2B1O00754 1011 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 PRAMEF12O95522 483 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 IDEP14735 1019 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 TYMPP19971 482 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 GABRR2P28476 465 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 ADSSP30520 456 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 ALDH1A3P47895 512 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 EPHB3P54753 998 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 CYP4F8P98187 520 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 TNK2Q07912 1038 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 FCHO2Q0JRZ9 810 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 SRSF5Q13243 272 aaKnown RBP11.14□□□□□ -0.63
NEDD8-202ENST00000396828 MYBPC2Q14324 1141 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 KCNB1Q14721 858 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 TMEM132DQ14C87 1099 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 SLC39A12Q504Y0 691 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 Q6ZS52 159 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 CCDC65Q8IXS2 484 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 EFCAB13Q8IY85 973 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 LEMD2Q8NC56 503 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 STKLD1Q8NE28 680 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 GIPC2Q8TF65 315 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 DEPDC1BQ8WUY9 529 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 PSMG2Q969U7 264 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 FUCA2Q9BTY2 467 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 ATXN3LQ9H3M9 355 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 IL21Q9HBE4 155 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 TMLHEQ9NVH6 421 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 NCDNQ9UBB6 729 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 MAN1B1Q9UKM7 699 aa11.14□□□□□ -0.63
NEDD8-202ENST00000396828 NUP210Q8TEM1 1887 aaPredicted RBP11.14□□□□□ -0.63
NEDD8-202ENST00000396828 CYB561D2O14569 222 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 CHADO15335 359 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 TBCAO75347 108 aaKnown RBP11.13□□□□□ -0.63
NEDD8-202ENST00000396828 PPP1R37O75864 691 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 CYP11A1P05108 521 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 ODC1P11926 461 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 PSMD2Q13200 908 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 MORC3Q14149 939 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 PUM1Q14671 1186 aaKnown RBP eCLIP11.13□□□□□ -0.632e-9■■□□□ 12.1
NEDD8-202ENST00000396828 GSE1Q14687 1217 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 CCDC142Q17RM4 750 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 KMT5BQ4FZB7 885 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 ANO6Q4KMQ2 910 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 GPR158Q5T848 1215 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 ZNF658Q5TYW1 1059 aaPredicted RBP11.13□□□□□ -0.63
NEDD8-202ENST00000396828 WSCD1Q658N2 575 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 ISM2Q6H9L7 571 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 UNC13DQ70J99 1090 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 TMEM150AQ86TG1 271 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 SFR1Q86XK3 245 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 MLKLQ8NB16 471 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 RIN3Q8TB24 985 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 CHFRQ96EP1 664 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 SEPT5Q99719 369 aaPredicted RBP11.13□□□□□ -0.63
NEDD8-202ENST00000396828 STRA6Q9BX79 667 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 SLC46A2Q9BY10 475 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 OXCT2Q9BYC2 517 aaPredicted RBP11.13□□□□□ -0.63
NEDD8-202ENST00000396828 FGFBP2Q9BYJ0 223 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 ZCWPW1Q9H0M4 648 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 PANK4Q9NVE7 773 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 DPP3Q9NY33 737 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 AGO2Q9UKV8 859 aaKnown RBP11.13□□□□□ -0.63
NEDD8-202ENST00000396828 STYXL1Q9Y6J8 313 aa11.13□□□□□ -0.63
NEDD8-202ENST00000396828 DENND4CQ5VZ89 1909 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 MYBPHLA2RUH7 354 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 OTOL1A6NHN0 477 aaPredicted RBP11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CHURC1-FNTBB4DL54 471 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 SPECC1L-ADORA2AF8WAN1 911 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 K7ESF4 209 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 XPOTO43592 962 aaKnown RBP11.12□□□□□ -0.63
NEDD8-202ENST00000396828 HRO43593 1189 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 RHOBTB3O94955 611 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 GAP43P17677 238 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 PPP1R2P41236 205 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 FNTBP49356 437 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 GPR15P49685 360 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CASP5P51878 434 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 ATXN1P54253 815 aaKnown RBP11.12□□□□□ -0.63
NEDD8-202ENST00000396828 PLD1Q13393 1074 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 STIM1Q13586 685 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 KYAT1Q16773 422 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 MGAT5BQ3V5L5 792 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CT47A1Q5JQC4 288 aaPredicted RBP11.12□□□□□ -0.63
NEDD8-202ENST00000396828 ARMCX5Q6P1M9 558 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 MAMSTRQ6ZN01 415 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 ZNF720Q7Z2F6 126 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CD302Q8IX05 232 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CSGALNACT1Q8TDX6 532 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 GPR88Q9GZN0 384 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 ST6GALNAC4Q9H4F1 302 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 TBC1D7Q9P0N9 293 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 CCL26Q9Y258 94 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 OBSL1O75147 1896 aa11.12□□□□□ -0.63
NEDD8-202ENST00000396828 GOLGA6L3A6NEY3 463 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 HCRTO43612 131 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 KLRC4O43908 158 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 CTHP32929 405 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 CXCL12P48061 93 aa11.11□□□□□ -0.63
NEDD8-202ENST00000396828 KPNA1P52294 538 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms