RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FAM228BP0C875 321 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 RARGP13631 454 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 RASA1P20936 1047 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 GPD1P21695 349 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 RFC5P40937 340 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ACADSBP45954 432 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ELMOD1Q8N336 334 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 PIM2Q9P1W9 311 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 MOSPD1Q9UJG1 213 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 CDC42BPBQ9Y5S2 1711 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 LSM1O15116 133 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ATMINO43313 823 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 HIST1H2AGP0C0S8 130 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 HIST1H2ADP20671 130 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 STIP1P31948 543 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 THEMIS2Q5TEJ8 643 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ACAD10Q6JQN1 1059 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 BRINP3Q76B58 766 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 APPL2Q8NEU8 664 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 ARHGEF1Q92888 912 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 TMEM143Q96AN5 459 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 HIST1H2AHQ96KK5 128 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 HIST1H2AJQ99878 128 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 H2AFJQ9BTM1 129 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 VCPKMTQ9H867 229 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 PHTF1Q9UMS5 762 aa10.68□□□□□ -0.7
LIMCH1-203ENST00000396595 PSTPIP1O43586 416 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 NDUFS3O75489 264 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 NPEPPSP55786 919 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RTL3Q8N8U3 475 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SH3KBP1Q96B97 665 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 LRRC39Q96DD0 335 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 C19orf60Q96EN9 201 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 MAGEB18Q96M61 343 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 CATSPER2Q96P56 530 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 NT5C1AQ9BXI3 368 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TMEM245Q9H330 911 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SOX13Q9UN79 622 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 OVOS2A0A0G2JMS6 1433 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 OVOS2A0A0J9YW53 1432 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 OVOS2Q6IE36 1432 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 IGSF9BQ9UPX0 1349 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 LOC100653049A0A140TA62 436 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 ASNA1O43681 348 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 EXTL3O43909 919 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KRT34O76011 436 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RUNX1T1Q06455 604 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 PUDPQ08623 228 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 EMC2Q15006 297 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KBTBD12Q3ZCT8 623 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 GPAT2Q6NUI2 795 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KLHL23Q8NBE8 558 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SHCBP1Q8NEM2 672 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 DDI1Q8WTU0 396 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KCNB2Q92953 911 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SENP2Q9HC62 589 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RIC8BQ9NVN3 520 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SCN3BQ9NY72 215 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TSR3Q9UJK0 312 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 HPSEQ9Y251 543 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KLHL20Q9Y2M5 609 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 DTNAQ9Y4J8 743 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TAF6LQ9Y6J9 622 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TULP4Q9NRJ4 1543 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TRPC5OSA6NMA1 111 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SCTRP47872 440 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 CPA2P48052 419 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 STX5Q13190 355 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RCN1Q15293 331 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TRIM71Q2Q1W2 868 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TKFCQ3LXA3 575 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SEPT1Q8WYJ6 367 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 FAM118BQ9BPY3 351 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TEX13BQ9BXU2 312 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 ZNF556Q9HAH1 456 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TRPC7Q9HCX4 862 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 ANKEF1Q9NU02 776 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 POLIQ9UNA4 740 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TFR2Q9UP52 801 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RSPH10B2B2RC85 870 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 PLEKP08567 350 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 RSPH10BP0C881 870 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 YY1P25490 414 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 TARSP26639 723 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 DSG1Q02413 1049 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 ADRM1Q16186 407 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 LRRC6Q86X45 466 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 SEPT12Q8IYM1 358 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 DCUN1D1Q96GG9 259 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 MAML3Q96JK9 1138 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 FANCEQ9HB96 536 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 CD248Q9HCU0 757 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 WHRNQ9P202 907 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 PRR12Q9ULL5 1215 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 KDM6AO15550 1401 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 POLRMTO00411 1230 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 ATXN8OSP0DMR3 200 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 PYGMP11217 842 aa10.67□□□□□ -0.7
LIMCH1-203ENST00000396595 GNL1P36915 607 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms