RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MSTO1Q9BUK6 570 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 KANSL3Q9P2N6 904 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 SLC9A2Q9UBY0 812 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ZNRF3Q9ULT6 936 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 A0A0B4J269 797 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 C3orf70A6NLC5 250 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 K7ERI5 159 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 C2CD2LO14523 706 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TRAFD1O14545 582 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 DKC1O60832 514 aaKnown RBP eCLIP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 BRD2P25440 801 aaKnown RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PTPN7P35236 360 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CTCFP49711 727 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 DYNLT1P63172 113 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TAF11Q15544 211 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CTC1Q2NKJ3 1217 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SLC45A4Q5BKX6 768 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 XRRA1Q6P2D8 792 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PAXIP1Q6ZW49 1069 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF526Q8TF50 670 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 MZB1Q8WU39 189 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CPT1BQ92523 772 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 NAF1Q96HR8 494 aaKnown RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF277Q9NRM2 450 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 LRRC42Q9Y546 428 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SNCAIPQ9Y6H5 919 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 COL4A5P29400 1685 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 WDR81Q562E7 1941 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 LRRIQ4A6NIV6 560 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 GOLGA8RI6L899 631 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ENTPD5O75356 428 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SMNDC1O75940 238 aaKnown RBP eCLIP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CALB1P05937 261 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 HMGB2P26583 209 aaKnown RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 OVGP1Q12889 678 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CYP4A22Q5TCH4 519 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PPP1R2P3Q6NXS1 205 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ADGRD1Q6QNK2 874 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 C3orf62Q6ZUJ4 267 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TAB3Q8N5C8 712 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TTC8Q8TAM2 541 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TCP10LQ8TDR4 215 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PYROXD1Q8WU10 500 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 NUDCD1Q96RS6 583 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 KLF6Q99612 283 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 FAM167BQ9BTA0 163 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 DENND2DQ9H6A0 471 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PPCSQ9HAB8 311 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ZFP69BQ9UJL9 534 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 DCTN4Q9UJW0 460 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ADGRA2Q96PE1 1338 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 TCRBV7S3A2A0A539 114 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ZWINTO95229 277 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ITGBL1O95965 494 aaPredicted RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 APBA3O96018 575 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PIGRP01833 764 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 HARSP12081 509 aaKnown RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 RAD23BP54727 409 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 XKR3Q5GH77 459 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SLFN12LQ6IEE8 588 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 CLNKQ7Z7G1 428 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 MTMR14Q8NCE2 650 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 RFWD2Q8NHY2 731 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 ACTL9Q8TC94 416 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SPDL1Q96EA4 605 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 PAFAH2Q99487 392 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 DHRS4Q9BTZ2 278 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SSU72Q9NP77 194 aaKnown RBP13.36□□□□□ -0.27
SHMT1-205ENST00000395684 SLC17A7Q9P2U7 560 aa13.36□□□□□ -0.27
SHMT1-205ENST00000395684 EIF4E1BA6NMX2 242 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 TTLL13PA6NNM8 815 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 H0Y3Z8 333 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PLSCR1O15162 318 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 RASSF2P50749 326 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 OTUD4Q01804 1114 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 SP2Q02086 613 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 BLMHQ13867 455 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PIGHQ14442 188 aaPredicted RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 SMTNL2Q2TAL5 461 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 KCNT1Q5JUK3 1230 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 RHPN2Q8IUC4 686 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ARFGAP1Q8N6T3 406 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 NAT8LQ8N9F0 302 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 MICAL1Q8TDZ2 1067 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PTPRN2Q92932 1015 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 MIPEPQ99797 713 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PORCNQ9H237 461 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ARID2Q68CP9 1835 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 BRWD3Q6RI45 1802 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 LDHAP00338 332 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ASS1P00966 412 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 IL1R2P27930 398 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PTPN4P29074 926 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ABCD1P33897 745 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 TNFSF9P41273 254 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ZC3H12AQ5D1E8 599 aaKnown RBP13.35□□□□□ -0.27
SHMT1-205ENST00000395684 SPDYAQ5MJ70 313 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 GPAT2Q6NUI2 795 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 PPIL6Q8IXY8 311 aa13.35□□□□□ -0.27
SHMT1-205ENST00000395684 ENDOVQ8N8Q3 282 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms