RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 XRRA1Q6P2D8 792 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 VSIG1Q86XK7 387 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 SLC7A3Q8WY07 619 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 CISHQ9NSE2 258 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 HAO1Q9UJM8 370 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 CNTN6Q9UQ52 1028 aa21.71■■□□□ 1.07
CLK3-202ENST00000395066 PARP14Q460N5 1801 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 TCRBV5S1A1TA0A578 114 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 GCKP35557 465 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 ARL2P36404 184 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 CDKN2BP42772 138 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 NAMPTP43490 491 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 CCNHP51946 323 aaPredicted RBP21.7■■□□□ 1.06
CLK3-202ENST00000395066 TAF11Q15544 211 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 WRNIP1Q96S55 665 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 SMC6Q96SB8 1091 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 HACL1Q9UJ83 578 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 STARD13Q9Y3M8 1113 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 H0YCG3 227 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 LIN7AO14910 233 aaPredicted RBP21.7■■□□□ 1.06
CLK3-202ENST00000395066 ATP5HO75947 161 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 CD48P09326 243 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 BLMHQ13867 455 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 TFDP1Q14186 410 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 TFDP3Q5H9I0 405 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 FNBP1LQ5T0N5 605 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 ZNF449Q6P9G9 518 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 IMPG2Q9BZV3 1241 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 LRMDAQ9H2I8 198 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 NFASCO94856 1347 aa21.7■■□□□ 1.06
CLK3-202ENST00000395066 LUC7L3O95232 432 aaKnown RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 IL1R2P27930 398 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 RAP1GAPP47736 663 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 LMNB2Q03252 620 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 NAIF1Q69YI7 327 aaPredicted RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 EMC1Q8N766 993 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 JOSD2Q8TAC2 188 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 CLUHO75153 1309 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 TCRBV7S3A2A0A539 114 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 ASS1P00966 412 aaKnown RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 KRT4P19013 534 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 RFC1P35251 1148 aaPredicted RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 YARSP54577 528 aaKnown RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 GRIK3Q13003 919 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 SPARCL1Q14515 664 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 GNPTABQ3T906 1256 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 SLFN12LQ6IEE8 588 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 ZNF280CQ8ND82 737 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 ANKRD27Q96NW4 1050 aa21.69■■□□□ 1.06
CLK3-202ENST00000395066 WDR83Q9BRX9 315 aaKnown RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 ALG13Q9NP73 1137 aaKnown RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 NKX1-2Q9UD57 310 aaPredicted RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 CORO1CQ9ULV4 474 aaPredicted RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 MAFBQ9Y5Q3 323 aaPredicted RBP21.69■■□□□ 1.06
CLK3-202ENST00000395066 RLFQ13129 1914 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 IRX1P78414 480 aaPredicted RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 OTUD4Q01804 1114 aaKnown RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 ENPEPQ07075 957 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 KIAA0319LQ8IZA0 1049 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 AGGF1Q8N302 714 aaeCLIP21.68■■□□□ 1.06
CLK3-202ENST00000395066 RIBC1Q8N443 379 aaPredicted RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 ARFGAP1Q8N6T3 406 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 UBR7Q8N806 425 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 ACTL9Q8TC94 416 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 AGTPBP1Q9UPW5 1226 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 USH1CQ9Y6N9 552 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 SRGAP2CP0DJJ0 459 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 PTPRAP18433 802 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 CTCFP49711 727 aaPredicted RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 TFAMQ00059 246 aaKnown RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 MOGSQ13724 837 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 MORF4L2Q15014 288 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 TAF5Q15542 800 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 CDCA2Q69YH5 1023 aaPredicted RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 DENND1BQ6P3S1 775 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 LVRNQ6Q4G3 990 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 EEPD1Q7L9B9 569 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 NAF1Q96HR8 494 aaKnown RBP21.68■■□□□ 1.06
CLK3-202ENST00000395066 LRRC37BQ96QE4 947 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 RNPEPL1Q9HAU8 725 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 CYTH4Q9UIA0 394 aa21.68■■□□□ 1.06
CLK3-202ENST00000395066 ALOX15BO15296 676 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 MAGEB2O15479 319 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 CBX6O95503 412 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 PIGRP01833 764 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 MARK3P27448 753 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 ABL2P42684 1182 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 TNFAIP1Q13829 316 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 PCYT2Q99447 389 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 FAM167BQ9BTA0 163 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 ACAD9Q9H845 621 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 POLIQ9UNA4 740 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 NUMBLQ9Y6R0 609 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 LDHAP00338 332 aaKnown RBP21.67■■□□□ 1.06
CLK3-202ENST00000395066 CALB1P05937 261 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 GNAZP19086 355 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 ADRA1DP25100 572 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 SATB1Q01826 763 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 PRKG1Q13976 671 aa21.67■■□□□ 1.06
CLK3-202ENST00000395066 HIF1AQ16665 826 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms