RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CFHP08603 1231 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 VIMP08670 466 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 POLR2BP30876 1174 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TNFSF9P41273 254 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 MMP13P45452 471 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 LACTBP83111 547 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 NFX1Q12986 1120 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TTLL4Q14679 1199 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ERMARDQ5T6L9 678 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 RHPN2Q8IUC4 686 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 LRRC71Q8N4P6 559 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 GPRC5AQ8NFJ5 357 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SEC16BQ96JE7 1060 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF668Q96K58 619 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SERPINB12Q96P63 405 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ACO2Q99798 780 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 INO80BQ9C086 356 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TXNRD2Q9NNW7 524 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 DNAJC17Q9NVM6 304 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SAMD15Q9P1V8 674 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 RBPJLQ9UBG7 517 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF148Q9UQR1 794 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SRCAPQ6ZRS2 3230 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 CCL15-CCL14A0A0B4J2E2 113 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 MMP8P22894 467 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 EDNRBP24530 442 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 DRP2Q13474 957 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 CCL15Q16663 113 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF568Q3ZCX4 644 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 DAB2IPQ5VWQ8 1189 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 IZUMO3Q5VZ72 239 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SCARA5Q6ZMJ2 495 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TRIM50Q86XT4 487 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 NLRP4Q96MN2 994 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TACO1Q9BSH4 297 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 CISHQ9NSE2 258 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 R3HDM2Q9Y2K5 976 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 ASB14A6NK59 587 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 TTC4O95801 387 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 CST3P01034 146 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 KRT19P08727 400 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 FUT4P22083 530 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 AUHQ13825 339 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 LONRF1Q17RB8 773 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 FOXP3Q9BZS1 431 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 KCNK9Q9NPC2 374 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 NXF1Q9UBU9 619 aaKnown RBP10.17□□□□□ -0.78
COL6A3-204ENST00000392003 RABL2BQ9UNT1 228 aa10.17□□□□□ -0.78
COL6A3-204ENST00000392003 SSC5DA1L4H1 1573 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 A0A1B0GUA9 196 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 PI4K2BG5E9Z4 385 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 NDC80O14777 642 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MED7O43513 233 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MSCO60682 206 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 EIF4BP23588 611 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 OSTNP61366 133 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 PLCB3Q01970 1234 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 PIGHQ14442 188 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 DBN1Q16643 649 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 KYNUQ16719 465 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MFSD5Q6N075 450 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 GPAT2Q6NUI2 795 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MPZL3Q6UWV2 235 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 CCDC197Q8NCU1 140 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 ARHGEF2Q92974 986 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MCEEQ96PE7 176 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 FAM118BQ9BPY3 351 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 DDX23Q9BUQ8 820 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 ACTR5Q9H9F9 607 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 RPF1Q9H9Y2 349 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 LRRC4CQ9HCJ2 640 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 DDX56Q9NY93 547 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 STRIP2Q9ULQ0 834 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 GJB6O95452 261 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 CETPP11597 493 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 MCL1Q07820 350 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 ATF7IP2Q5U623 682 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 C2orf69Q8N8R5 385 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 SMARCAD1Q9H4L7 1026 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 SYNCQ9H7C4 482 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 KCNH4Q9UQ05 1017 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 TMEM191CA6NGB0 347 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 EDN1P05305 212 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 WEE2P0C1S8 567 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 CHKAP35790 457 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 IFNAR2P48551 515 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 CCDC38Q502W7 563 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 ZNF667Q5HYK9 610 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 CELF3Q5SZQ8 465 aaKnown RBP10.16□□□□□ -0.78
COL6A3-204ENST00000392003 LRRC38Q5VT99 294 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 PLPPR4Q7Z2D5 763 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 P3H4Q92791 437 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 NACA2Q9H009 215 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 KLHL11Q9NVR0 708 aa10.16□□□□□ -0.78
COL6A3-204ENST00000392003 LRRD1A4D1F6 860 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 C5orf60A6NFR6 353 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 PDHXO00330 501 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 ACKR2O00590 384 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 DRD4P21917 467 aa10.15□□□□□ -0.78
COL6A3-204ENST00000392003 SLC26A2P50443 739 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms