RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 SETD4Q9NVD3 440 aa24.42■■□□□ 1.5
VPS16-201ENST00000380443 EFR3BQ9Y2G0 817 aa24.42■■□□□ 1.5
VPS16-201ENST00000380443 PTPN22Q9Y2R2 807 aa24.42■■□□□ 1.5
VPS16-201ENST00000380443 MGAMO43451 1857 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 SRRM3A6NNA2 597 aaPredicted RBP24.41■■□□□ 1.5
VPS16-201ENST00000380443 IGF2BP3O00425 579 aaKnown RBP eCLIP24.41■■□□□ 1.5
VPS16-201ENST00000380443 TRPA1O75762 1119 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 IRAK1P51617 712 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 ODF2Q5BJF6 829 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 TRMT10CQ7L0Y3 403 aaKnown RBP24.41■■□□□ 1.5
VPS16-201ENST00000380443 TMEM109Q9BVC6 243 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 SMYD3Q9H7B4 428 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 CHST7Q9NS84 486 aa24.41■■□□□ 1.5
VPS16-201ENST00000380443 NDC80O14777 642 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 DYNC1LI2O43237 492 aaPredicted RBP24.4■■□□□ 1.5
VPS16-201ENST00000380443 SMIM10L2AP0DMW4 78 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 SMIM10L2BP0DMW5 78 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 KRT3P12035 628 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 RAP1GAPP47736 663 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 PTPN20Q4JDL3 420 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 NOTUMQ6P988 496 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 CCDC89Q8N998 374 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 SLITRK1Q96PX8 696 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 PPP1R16BQ96T49 567 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 ELOVL4Q9GZR5 314 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 WDR3Q9UNX4 943 aaKnown RBP eCLIP24.4■■□□□ 1.5
VPS16-201ENST00000380443 GPR32O75388 356 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 KRT7P08729 469 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 YARSP54577 528 aaKnown RBP24.4■■□□□ 1.5
VPS16-201ENST00000380443 CDH8P55286 799 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 ZNF252P-AS1Q0IIN9 211 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 HADHQ16836 314 aaKnown RBP24.4■■□□□ 1.5
VPS16-201ENST00000380443 OLFML2BQ68BL8 750 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 KCTD16Q68DU8 428 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 KIF12Q96FN5 646 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 FRMD8P1Q9BZ68 369 aaPredicted RBP24.4■■□□□ 1.5
VPS16-201ENST00000380443 FOXP3Q9BZS1 431 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 ASIC3Q9UHC3 531 aa24.4■■□□□ 1.5
VPS16-201ENST00000380443 CTCFP49711 727 aaPredicted RBP24.39■■□□□ 1.49
VPS16-201ENST00000380443 CPT1AP50416 773 aa24.39■■□□□ 1.49
VPS16-201ENST00000380443 PSMC1P62191 440 aaKnown RBP24.39■■□□□ 1.49
VPS16-201ENST00000380443 LRRC31Q6UY01 552 aa24.39■■□□□ 1.49
VPS16-201ENST00000380443 CATSPER4Q7RTX7 472 aa24.39■■□□□ 1.49
VPS16-201ENST00000380443 TRAIPQ9BWF2 469 aa24.39■■□□□ 1.49
VPS16-201ENST00000380443 DRG1Q9Y295 367 aaKnown RBP24.39■■□□□ 1.49
VPS16-201ENST00000380443 MICAL2O94851 1124 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 KRT1P04264 644 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 LRRC52Q8N7C0 313 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 HERPUD2Q9BSE4 406 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 SYNCQ9H7C4 482 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 NEU2Q9Y3R4 380 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 RALGAPA2Q2PPJ7 1873 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 EIF3HO15372 352 aaKnown RBP eCLIP24.38■■□□□ 1.49
VPS16-201ENST00000380443 GJB6O95452 261 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 ZNF865P0CJ78 1059 aaPredicted RBP24.38■■□□□ 1.49
VPS16-201ENST00000380443 DARSP14868 501 aaKnown RBP24.38■■□□□ 1.49
VPS16-201ENST00000380443 ATF2P15336 505 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 PSMA2P25787 234 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 HOXA11P31270 313 aaPredicted RBP24.38■■□□□ 1.49
VPS16-201ENST00000380443 HNRNPH2P55795 449 aaKnown RBP24.38■■□□□ 1.49
VPS16-201ENST00000380443 SNX1Q13596 522 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 KIZQ2M2Z5 673 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 KRT71Q3SY84 523 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 SPOCD1Q6ZMY3 1216 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 ZNF365Q70YC5 407 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 SH2D3CQ8N5H7 860 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 BEST2Q8NFU1 509 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 MCRS1Q96EZ8 462 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 HEXIM2Q96MH2 286 aaKnown RBP24.38■■□□□ 1.49
VPS16-201ENST00000380443 NT5C1AQ9BXI3 368 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 HEMGNQ9BXL5 484 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 CFHR5Q9BXR6 569 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 EPB41L4BQ9H329 900 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 CPA4Q9UI42 421 aa24.38■■□□□ 1.49
VPS16-201ENST00000380443 CITO14578 2027 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 F8VP50 259 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 HAS3O00219 553 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 O00370 1275 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 NPTXRO95502 500 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 CYP2C9P11712 490 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 GNGT1P63211 74 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 OGDHQ02218 1023 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 MFSD10Q14728 455 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 TFDP3Q5H9I0 405 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 CYP4A22Q5TCH4 519 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 RHBDF2Q6PJF5 856 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 LCLAT1Q6UWP7 414 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 XYLT1Q86Y38 959 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 IPO4Q8TEX9 1081 aaKnown RBP24.37■■□□□ 1.49
VPS16-201ENST00000380443 USP6NLQ92738 828 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 KAT2BQ92831 832 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 RNF25Q96BH1 459 aaPredicted RBP24.37■■□□□ 1.49
VPS16-201ENST00000380443 PGM2Q96G03 612 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 SNX27Q96L92 541 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 CCDC114Q96M63 670 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 KATNAL1Q9BW62 490 aa24.37■■□□□ 1.49
VPS16-201ENST00000380443 ADCY6O43306 1168 aa24.36■■□□□ 1.49
VPS16-201ENST00000380443 CAPN15O75808 1086 aa24.36■■□□□ 1.49
VPS16-201ENST00000380443 ATF7P17544 494 aaPredicted RBP24.36■■□□□ 1.49
VPS16-201ENST00000380443 IVDP26440 423 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms