RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 HNRNPDLO14979 420 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 AKAP8O43823 692 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 PLOD3O60568 738 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PHF2O75151 1096 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 UFL1O94874 794 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ACADVLP49748 655 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 EIF5AP63241 154 aaKnown RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 XIAPP98170 497 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 CCNIQ14094 377 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ANKS6Q68DC2 871 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TTC30AQ86WT1 665 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 ZKSCAN4Q969J2 545 aaPredicted RBP9.07□□□□□ -0.96
LIG3-202ENST00000378526 AP3M1Q9Y2T2 418 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 STARD13Q9Y3M8 1113 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 PTPN23Q9H3S7 1636 aa9.07□□□□□ -0.96
LIG3-202ENST00000378526 TSPAN19P0C672 248 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PDHBP11177 359 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SLC1A4P43007 532 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 GPR1P46091 355 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 RHEBQ15382 184 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 NECAB2Q7Z6G3 386 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 RHOT1Q8IXI2 618 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 MAFIPQ8WZ33 124 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PDS5BQ9NTI5 1447 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 JAK2O60674 1132 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 YWHAQP27348 245 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SKIV2L2P42285 1042 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 CNTN1Q12860 1018 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CDH18Q13634 790 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CASP12Q6UXS9 341 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ERO1BQ86YB8 467 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TMPRSS6Q8IU80 811 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TRPV3Q8NET8 790 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SH3TC2Q8TF17 1288 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SP140LQ9H930 580 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CAB39LQ9H9S4 337 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TRNAU1APQ9NX07 287 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 TIAM1Q13009 1591 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 MYH3P11055 1940 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 GDI2P50395 445 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 ALDH3A2P51648 485 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 LPIN1Q14693 890 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CACHD1Q5VU97 1274 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TRIM65Q6PJ69 517 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 C12orf50Q8NA57 414 aaPredicted RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 XXYLT1Q8NBI6 393 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 E2F7Q96AV8 911 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 BCL2L14Q9BZR8 327 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CHRAC1Q9NRG0 131 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CMTM6Q9NX76 183 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 HAO1Q9UJM8 370 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ZNF112Q9UJU3 913 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SNX12Q9UMY4 172 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 NAIPQ13075 1403 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 C15orf38-AP3S2A0A0A6YYH1 394 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TMCC2O75069 709 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 IFNGR2P38484 337 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ZBTB6Q15916 424 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ODR4Q5SWX8 454 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CCNI2Q6ZMN8 369 aaPredicted RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 YTHDF3Q7Z739 585 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 LHFPL3Q86UP9 236 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ATG16L2Q8NAA4 619 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIG3-202ENST00000378526 POFUT2Q9Y2G5 429 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CASKIN1Q8WXD9 1431 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 LGALS16A8MUM7 142 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 GPAA1O43292 621 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 TTLL1O95922 423 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 MAGEA6P43360 314 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ARSEP51690 589 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ARMC6Q6NXE6 501 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 GRIP2Q9C0E4 1043 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 EDARQ9UNE0 448 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIG3-202ENST00000378526 LOC100653049A0A140TA62 436 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PSMD12O00232 456 aaPredicted RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 NEMP1O14524 444 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PDGFRBP09619 1106 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PAICSP22234 425 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 PRIM2P49643 509 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ZNF671Q8TAW3 534 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PPP1R36Q96LQ0 422 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 Q96MT0 163 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 UGT2B28Q9BY64 529 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ZSWIM6Q9HCJ5 1215 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SAR1AQ9NR31 198 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 MYO3BQ8WXR4 1341 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SNRPAP09012 282 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 GRIK1P39086 918 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 PIK3CBP42338 1070 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 ALDH6A1Q02252 535 aaKnown RBP9.06□□□□□ -0.96
LIG3-202ENST00000378526 TMEM26Q6ZUK4 368 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 RNF135Q8IUD6 432 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 CCDC28AQ8IWP9 274 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 GJA10Q969M2 543 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SUCLG2Q96I99 432 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 SNX7Q9UNH6 387 aa9.06□□□□□ -0.96
LIG3-202ENST00000378526 M0QX08 132 aa9.05□□□□□ -0.96
LIG3-202ENST00000378526 ZBTB5O15062 677 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms