RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ADORA2AP29274 412 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 KPNA2P52292 529 aaKnown RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 DNAJC3Q13217 504 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PABPC5Q96DU9 382 aaKnown RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 SEC16BQ96JE7 1060 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 TRIM56Q9BRZ2 755 aaKnown RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 SP110Q9HB58 689 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PSMC3IPQ9P2W1 217 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 MID2Q9UJV3 735 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ASTN2O75129 1339 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 CXCL11O14625 94 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 APOEP02649 317 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 MYBL2P10244 700 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 MX2P20592 715 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 AKAP5P24588 427 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ADCYAP1R1P41586 468 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PRKCIP41743 596 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 SLC26A2P50443 739 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ZNF200P98182 395 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PTGISQ16647 500 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ITPRIPL1Q6GPH6 555 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 FAM117BQ6P1L5 589 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 DDX23Q9BUQ8 820 aaKnown RBP13.81□□□□□ -0.2
NPHP4-203ENST00000378169 ZFYVE28Q9HCC9 887 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 NPHS2Q9NP85 383 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 PPP2R3BQ9Y5P8 575 aa13.81□□□□□ -0.2
NPHP4-203ENST00000378169 KCPQ6ZWJ8 1503 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PSTPIP1O43586 416 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 GJB1P08034 283 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PAMP19021 973 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 GLRA2P23416 452 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 GTF2BQ00403 316 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PTK7Q13308 1070 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 SV2CQ496J9 727 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 KLC3Q6P597 504 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 LNX1Q8TBB1 728 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 RXFP2Q8WXD0 754 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PDGFDQ9GZP0 370 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PCMTD2Q9NV79 361 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 DDIT4Q9NX09 232 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 SNTG2Q9NY99 539 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 DONSONQ9NYP3 566 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 GTSE1Q9NYZ3 720 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PAK5Q9P286 719 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TSR3Q9UJK0 312 aaKnown RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 M0QYT0 321 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 EEF2KO00418 725 aaKnown RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TADA2AO75478 443 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 VDRP11473 427 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 RARGP13631 454 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 EPHB2P29323 1055 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 ART3Q13508 389 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TSEN2Q8NCE0 465 aaKnown RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 GTF3C2Q8WUA4 911 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 IFT43Q96FT9 208 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PPP1R36Q96LQ0 422 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 CYP4F11Q9HBI6 524 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 SARS2Q9NP81 518 aaKnown RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TIMM13Q9Y5L4 95 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-203ENST00000378169 CLGNO14967 610 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 ZNF263O14978 683 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TBC1D12O60347 775 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 FAM107AO95990 144 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 FAM200BP0CF97 657 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 OR1G1P47890 313 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 DAB2IPQ5VWQ8 1189 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 IRF2BP2Q7Z5L9 587 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 RASSF3Q86WH2 238 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 HASPINQ8TF76 798 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 FAM172AQ8WUF8 416 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 TMEM176AQ96HP8 235 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 ZBED2Q9BTP6 218 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 VPS33BQ9H267 617 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 BCAS3Q9H6U6 928 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 ECT2Q9H8V3 914 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 PSD3Q9NYI0 1048 aa13.8□□□□□ -0.2
NPHP4-203ENST00000378169 ACKR2O00590 384 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 TLR2O60603 784 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 THPOP40225 353 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 GCLCP48506 637 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 MARCKSL1P49006 195 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 HABP4Q5JVS0 413 aaKnown RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 MROH9Q5TGP6 573 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 C11orf63Q6NUN7 778 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 BRSK2Q8IWQ3 736 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 KCNV2Q8TDN2 545 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 PORCNQ9H237 461 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 SETD1AO15047 1707 aaKnown RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 PCSK1P29120 753 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 PEX19P40855 299 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 TAF11Q15544 211 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 FASTKD1Q53R41 847 aaKnown RBP13.79□□□□□ -0.2
NPHP4-203ENST00000378169 GLB1LQ6UWU2 654 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 MMP14P50281 582 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 NDST1P52848 882 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 MDH1BQ5I0G3 518 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 MFSD7Q6UXD7 560 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 ZPBP2Q6X784 338 aa13.79□□□□□ -0.2
NPHP4-203ENST00000378169 PPIL6Q8IXY8 311 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms