RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 DGKIO75912 1065 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 HEXIM1O94992 359 aaKnown RBP15.16■□□□□ 0.02
HMGA1-203ENST00000374116 POMCP01189 267 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 CXCL8P10145 99 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 USP37Q86T82 979 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 NPAS4Q8IUM7 802 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 GPD1LQ8N335 351 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 RASGEF1CQ8N431 466 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 SEMA4DQ92854 862 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 HES6Q96HZ4 224 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 GDAP1L1Q96MZ0 367 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 YME1L1Q96TA2 773 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 TMEM8AQ9HCN3 771 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 CACNG4Q9UBN1 327 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 AMFRQ9UKV5 643 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 COL4A6Q14031 1691 aa15.16■□□□□ 0.02
HMGA1-203ENST00000374116 FNDC1Q4ZHG4 1894 aaPredicted RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CHD9Q3L8U1 2897 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 ZNF623O75123 536 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 GLI1P08151 1106 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 MCF2P10911 925 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RDXP35241 583 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RAB27AP51159 221 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 WNT7BP56706 349 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 MRPS25P82663 173 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CRYMQ14894 314 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 DCAF4L1Q3SXM0 396 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 KRT39Q6A163 491 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CRELD2Q6UXH1 353 aaPredicted RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 C15orf39Q6ZRI6 1047 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 MRPL10Q7Z7H8 261 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.15■□□□□ 0.021e-6■■■■■ 56.2
HMGA1-203ENST00000374116 SLC9A7Q96T83 725 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 HINFPQ9BQA5 517 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 PBX4Q9BYU1 374 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 GOLPH3Q9H4A6 298 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RSAD1Q9HA92 442 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 YBX2Q9Y2T7 364 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 ARL5CA6NH57 179 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CCDC188H7C350 402 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 KIAA0391O15091 583 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RASSF9O75901 435 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 EOMESO95936 686 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 PBX3P40426 434 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 SCNN1GP51170 649 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 MFAP3P55082 362 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 HADHBP55084 474 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 TCEAL1Q15170 157 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 ALS2CLQ60I27 953 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 EP400NLQ6ZTU2 488 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CCDC50Q8IVM0 306 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RHOT2Q8IXI1 618 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 OTUD6BQ8N6M0 293 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 EIF1ADQ8N9N8 165 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 RIN2Q8WYP3 895 aaPredicted RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 KREMEN1Q96MU8 473 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CASD1Q96PB1 797 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 POP1Q99575 1024 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 KIAA1586Q9HCI6 787 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 EPB41L5Q9HCM4 733 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 SEPT11Q9NVA2 429 aaKnown RBP15.15■□□□□ 0.02
HMGA1-203ENST00000374116 CITO14578 2027 aa15.15■□□□□ 0.02
HMGA1-203ENST00000374116 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 OGTO15294 1046 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 EXTL3O43909 919 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 BUB1BO60566 1050 aaPredicted RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 CA3P07451 260 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 GRM5P41594 1212 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 RNASE9P60153 205 aaKnown RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 GUCY2DQ02846 1103 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 SLC10A6Q3KNW5 377 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 SLFN12LQ6IEE8 588 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 SV2AQ7L0J3 742 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 FAM71AQ8IYT1 594 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 ABI1Q8IZP0 508 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 C1orf131Q8NDD1 294 aaKnown RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 GSTCDQ8NEC7 633 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 CCDC127Q96BQ5 260 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 PGBD4Q96DM1 585 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 FAXDC2Q96IV6 333 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 ACAP3Q96P50 834 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 ISCUQ9H1K1 167 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 ELAC1Q9H777 363 aaKnown RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 OSGEPQ9NPF4 335 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 MTUS1Q9ULD2 1270 aa15.14■□□□□ 0.01
HMGA1-203ENST00000374116 TTC7AQ9ULT0 858 aaPredicted RBP15.14■□□□□ 0.01
HMGA1-203ENST00000374116 SOX1O00570 391 aaPredicted RBP15.13■□□□□ 0.01
HMGA1-203ENST00000374116 B4GALT3O60512 393 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 SKIP12755 728 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 ABCB4P21439 1286 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 ACTN3Q08043 901 aaPredicted RBP15.13■□□□□ 0.01
HMGA1-203ENST00000374116 ZNF280BQ86YH2 543 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 EGFL6Q8IUX8 553 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 PHOSPHO2Q8TCD6 241 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 SHC3Q92529 594 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 KAT5Q92993 513 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 ZNF689Q96CS4 500 aaPredicted RBP15.13■□□□□ 0.01
HMGA1-203ENST00000374116 THAP2Q9H0W7 228 aa15.13■□□□□ 0.01
HMGA1-203ENST00000374116 CERS4Q9HA82 394 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms