RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RHOT2Q8IXI1 618 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 TPCN2Q8NHX9 752 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 SUSD3Q96L08 255 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 ALS2CR12Q96Q35 445 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 RNF216Q9NWF9 866 aaPredicted RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 DDX43Q9NXZ2 648 aaKnown RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 ADAM22Q9P0K1 906 aa19.74■□□□□ 0.75
CLN3-206ENST00000360019 CNOT8Q9UFF9 292 aaKnown RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 PRG3Q9Y2Y8 225 aaPredicted RBP19.74■□□□□ 0.75
CLN3-206ENST00000360019 COL4A6Q14031 1691 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 CYP11A1P05108 521 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 GPD2P43304 727 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 LHX1P48742 406 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 PSMC1P62191 440 aaKnown RBP19.73■□□□□ 0.75
CLN3-206ENST00000360019 STILQ15468 1287 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 CCDC142Q17RM4 750 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 KIAA0319Q5VV43 1072 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 ARHGAP17Q68EM7 881 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 PPP1R2P3Q6NXS1 205 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 UBA3Q8TBC4 463 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 TNIP3Q96KP6 325 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 NAPGQ99747 312 aaPredicted RBP19.73■□□□□ 0.75
CLN3-206ENST00000360019 MRPL9Q9BYD2 267 aaKnown RBP19.73■□□□□ 0.75
CLN3-206ENST00000360019 CTTNBP2NLQ9P2B4 639 aa19.73■□□□□ 0.75
CLN3-206ENST00000360019 CTAGE9A4FU28 777 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 ENC1O14682 589 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 NRP1O14786 923 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 ATP2C2O75185 946 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 DGKIO75912 1065 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 PFKMP08237 780 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 MYBL1P10243 752 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 CCDC130P13994 396 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 DEFB103AP81534 67 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 C1QBPQ07021 282 aaKnown RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 PTPN20Q4JDL3 420 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 PKDCCQ504Y2 493 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 PHLDB2Q86SQ0 1253 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 TTC30AQ86WT1 665 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 LRRC57Q8N9N7 239 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 B3GALNT2Q8NCR0 500 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 TOP1MTQ969P6 601 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 TRIM11Q96F44 468 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 VCPIP1Q96JH7 1222 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 RTP3Q9BQQ7 232 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 GOLPH3Q9H4A6 298 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 AVENQ9NQS1 362 aaPredicted RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 ATP1A1P05023 1023 aaKnown RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 SLC11A1P49279 550 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 HADHBP55084 474 aaKnown RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 IFI16Q16666 785 aaKnown RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 TMCO2Q7Z6W1 182 aaPredicted RBP19.72■□□□□ 0.75
CLN3-206ENST00000360019 LRRC43Q8N309 656 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 NUP85Q9BW27 656 aa19.72■□□□□ 0.75
CLN3-206ENST00000360019 MTA2O94776 668 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 PTPN1P18031 435 aaKnown RBP19.71■□□□□ 0.75
CLN3-206ENST00000360019 WDR5P61964 334 aaKnown RBP19.71■□□□□ 0.75
CLN3-206ENST00000360019 C16orf59Q7L2K0 433 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 SPATA18Q8TC71 538 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 CPXM1Q96SM3 734 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 IL23AQ9NPF7 189 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 MARCH5Q9NX47 278 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 TJP2Q9UDY2 1190 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 JRKLQ9Y4A0 524 aa19.71■□□□□ 0.75
CLN3-206ENST00000360019 BUB1BO60566 1050 aaPredicted RBP19.7■□□□□ 0.74
CLN3-206ENST00000360019 TKTP29401 623 aaKnown RBP19.7■□□□□ 0.74
CLN3-206ENST00000360019 PDCLQ13371 301 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 ERICH1Q86X53 443 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 ZNF564Q8TBZ8 553 aaPredicted RBP19.7■□□□□ 0.74
CLN3-206ENST00000360019 SLC2A14Q8TDB8 520 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 SYT15Q9BQS2 421 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 CRTAC1Q9NQ79 661 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 UVRAGQ9P2Y5 699 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 DSEQ9UL01 958 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 PCDHB8Q9UN66 801 aa19.7■□□□□ 0.74
CLN3-206ENST00000360019 URI1O94763 535 aaPredicted RBP19.69■□□□□ 0.74
CLN3-206ENST00000360019 FTCDO95954 541 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 AMHP03971 560 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 CALB1P05937 261 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TYMPP19971 482 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 PBX3P40426 434 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 AMPD2Q01433 879 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 PLEKHA7Q6IQ23 1121 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 SLFN11Q7Z7L1 901 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 BADQ92934 168 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TMEM175Q9BSA9 504 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 DNAI2Q9GZS0 605 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 PRKAG2Q9UGJ0 569 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TCRBV5S1A1TA0A578 114 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TULP2O00295 520 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 EFCAB14O75071 495 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TADA2AO75478 443 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 ALDH2P05091 517 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 GALTP07902 379 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 ADORA2BP29275 332 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 MDH1BQ5I0G3 518 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 CYP4A22Q5TCH4 519 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 LIN9Q5TKA1 542 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 OTOP2Q7RTS6 562 aa19.69■□□□□ 0.74
CLN3-206ENST00000360019 TMEM173Q86WV6 379 aaPredicted RBP19.69■□□□□ 0.74
CLN3-206ENST00000360019 METTL23Q86XA0 190 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms