RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RBM15Q96T37 977 aaKnown RBP eCLIP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 GIMAP4Q9NUV9 329 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 VPS28Q9UK41 221 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 ADGRG1Q9Y653 693 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 SUPT20HL2P0C7V6 817 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 RPAINQ86UA6 219 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 C4orf33Q8N1A6 199 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 PLA2G4CQ9UP65 541 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 RNF17Q9BXT8 1623 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 CNTNAP5Q8WYK1 1306 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 DPYDQ12882 1025 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 DPF2Q92785 391 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 TRABDQ9H4I3 376 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 PDS5AQ29RF7 1337 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 TARSL2A2RTX5 802 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 EFCAB14O75071 495 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 MYL2P10916 166 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 AKAP5P24588 427 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 ZNF614Q8N883 585 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 OR9Q1Q8NGQ5 310 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 SHCBP1LQ9BZQ2 653 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 MRPL40Q9NQ50 206 aaKnown RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 SMARCAL1Q9NZC9 954 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 RPA1P27694 616 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 PTPN7P35236 360 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 BTG3Q14201 252 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 IFNLR1Q8IU57 520 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-201ENST00000359947 C17orf80Q9BSJ5 609 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 PCDHB2Q9Y5E7 798 aa16.24■□□□□ 0.19
PTPRF-201ENST00000359947 AP3B1O00203 1094 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 NFIBO00712 420 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ATP8B1O43520 1251 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 PDHA1P08559 390 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 TCN1P20061 433 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 TFB1MQ8WVM0 346 aaKnown RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 A0A087WZ62 844 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 SLC12A8A0AV02 714 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 CCDC85CA6NKD9 419 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 TCEA2Q15560 299 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 SARM1Q6SZW1 724 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 CHMP1BQ7LBR1 199 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 KLF6Q99612 283 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 FDXACB1Q9BRP7 624 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 PSD3Q9NYI0 1048 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ARHGAP26Q9UNA1 814 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 AP1ARQ63HQ0 302 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 SGF29Q96ES7 293 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ANKEF1Q9NU02 776 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 GHRP10912 638 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 DHX34Q14147 1143 aaKnown RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 SLC18A3Q16572 532 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ZNF484Q5JVG2 852 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 C3orf62Q6ZUJ4 267 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 GOLPH3Q9H4A6 298 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ENO3P13929 434 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-201ENST00000359947 CDC16Q13042 620 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 ADNPQ9H2P0 1102 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 TRPM5Q9NZQ8 1165 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 TSPAN3O60637 253 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 DENND5BQ6ZUT9 1274 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 FAM129AQ9BZQ8 928 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 NPHS2Q9NP85 383 aa16.23■□□□□ 0.19
PTPRF-201ENST00000359947 POLBP06746 335 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 COMTP21964 271 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 PTGER2P43116 358 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 SLC44A2Q8IWA5 706 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 WWOXQ9NZC7 414 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 ANO9A1A5B4 782 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 CBX4O00257 560 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 DARSP14868 501 aaKnown RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 ECT2Q9H8V3 914 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 ZNF200P98182 395 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 CLEC16AQ2KHT3 1053 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 PRR23CQ6ZRP0 262 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 SNTG2Q9NY99 539 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 PKD2L2Q9NZM6 624 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 CD163L1Q9NR16 1453 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 DDTLA6NHG4 134 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 HOXA2O43364 376 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 DGKIO75912 1065 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 IL10P22301 178 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 SLC16A1P53985 500 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 LAMB3Q13751 1172 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 PXMP2Q9NR77 195 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 UVRAGQ9P2Y5 699 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 CAMSAP1Q5T5Y3 1602 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 C2orf81A6NN90 581 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 SPATC1LQ9H0A9 340 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 XPNPEP3Q9NQH7 507 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 SMPD4Q9NXE4 827 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 PTGISQ16647 500 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 KCNT1Q5JUK3 1230 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 ST13P4Q8IZP2 240 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 CEP70Q8NHQ1 597 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 LRRC1Q9BTT6 524 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 EIF2AQ9BY44 585 aaKnown RBP16.22■□□□□ 0.19
PTPRF-201ENST00000359947 KCTD10Q9H3F6 313 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 IQGAP3Q86VI3 1631 aa16.22■□□□□ 0.19
PTPRF-201ENST00000359947 A0A1W2PQC6 194 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 TCP11X1B4DZS4 312 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms