RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 USTQ9Y2C2 406 aa9.71□□□□□ -0.85
UPF2-202ENST00000357604 COL11A1P12107 1806 aaPredicted RBP9.71□□□□□ -0.85
UPF2-202ENST00000357604 INPPL1O15357 1258 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 ADRB2P07550 413 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 FSHRP23945 695 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 PAFAH1B1P43034 410 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 AMHR2Q16671 573 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 SV2AQ7L0J3 742 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 RHOT2Q8IXI1 618 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 LINC01465Q8N7H1 131 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 RTN4Q9NQC3 1192 aaKnown RBP9.71□□□□□ -0.86
UPF2-202ENST00000357604 FAM49BQ9NUQ9 324 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 IP6K2Q9UHH9 426 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 ITIH6Q6UXX5 1313 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 SYNJ2BP-COX16A0A087WUM0 186 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 GOLGA8SH3BPF8 625 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 STAU1O95793 577 aaKnown RBP9.71□□□□□ -0.86
UPF2-202ENST00000357604 CTSAP10619 480 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 MAGEA1P43355 309 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 RECQLP46063 649 aaPredicted RBP9.71□□□□□ -0.86
UPF2-202ENST00000357604 RNASE9P60153 205 aaKnown RBP9.71□□□□□ -0.86
UPF2-202ENST00000357604 ADCY1Q08828 1119 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 MKRN4PQ13434 485 aaPredicted RBP9.71□□□□□ -0.86
UPF2-202ENST00000357604 CEP295NLQ96MC4 621 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 AGPAT1Q99943 283 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 NRDE2Q9H7Z3 1164 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 COX16Q9P0S2 106 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 CDY1Q9Y6F8 540 aa9.71□□□□□ -0.86
UPF2-202ENST00000357604 TMEM189-UBE2V1I3L0A0 370 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 F9P00740 461 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 LRPAP1P30533 357 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 RAP1GAPP47736 663 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 NDST1P52848 882 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 ERVK-21P61565 698 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 NUP93Q8N1F7 819 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 HLA-CQ95604 372 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MRPL38Q96DV4 380 aaKnown RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 ABCB6Q9NP58 842 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MAN1C1Q9NR34 630 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 CISHQ9NSE2 258 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 ZFP37Q9Y6Q3 630 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 ZBTB42B2RXF5 422 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 AKAP3O75969 853 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 ZNF18P17022 549 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 PSMA2P25787 234 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 TKTP29401 623 aaKnown RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 DEFB103AP81534 67 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 C18orf8Q96DM3 657 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MINDY3Q9H8M7 445 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 AGO3Q9H9G7 860 aaKnown RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 MYO1FO00160 1098 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 CCL16O15467 120 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 STBD1O95210 358 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 IRF1P10914 325 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 CA4P22748 312 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 XPAP23025 273 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 BRCC3P46736 316 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MAP3K7CLP57077 242 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MAPK7Q13164 816 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 KLHDC7AQ5VTJ3 777 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 GET4Q7L5D6 327 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 GABPB2Q8TAK5 448 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 FAM161BQ96MY7 647 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 PLCB1Q9NQ66 1216 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 FNIP2Q9P278 1114 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 MACROD2A1Z1Q3 448 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 CKMP06732 381 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 CCDC85BQ15834 202 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 B3GALNT2Q8NCR0 500 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 PPP1R13BQ96KQ4 1090 aa9.7□□□□□ -0.86
UPF2-202ENST00000357604 TIMM13Q9Y5L4 95 aaPredicted RBP9.7□□□□□ -0.86
UPF2-202ENST00000357604 RTN2O75298 545 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 FAM189BP81408 668 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 PLCB3Q01970 1234 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 PRPSAP1Q14558 356 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 VSTM4Q8IW00 320 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 SLC39A11Q8N1S5 342 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 MNS1Q8NEH6 495 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 ZNF592Q92610 1267 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 ZFP42Q96MM3 310 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 MGAMO43451 1857 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 CASP4P49662 377 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 MARSP56192 900 aaKnown RBP9.69□□□□□ -0.86
UPF2-202ENST00000357604 TWF1Q12792 350 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 SARM1Q6SZW1 724 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 DHX40Q8IX18 779 aaKnown RBP9.69□□□□□ -0.86
UPF2-202ENST00000357604 COLGALT2Q8IYK4 626 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 GIPC2Q8TF65 315 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 OVCA2Q8WZ82 227 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 SECISBP2LQ93073 1101 aaKnown RBP9.69□□□□□ -0.86
UPF2-202ENST00000357604 ALG13Q9NP73 1137 aaKnown RBP9.69□□□□□ -0.86
UPF2-202ENST00000357604 TBC1D14Q9P2M4 693 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 TTC26A0AVF1 554 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 H3BNC9 293 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 CYP26A1O43174 497 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 CASP5P51878 434 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 ADAM17P78536 824 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 PFKPQ01813 784 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 SLC10A6Q3KNW5 377 aa9.69□□□□□ -0.86
UPF2-202ENST00000357604 HECTD3Q5T447 861 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms