RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 POU3F3P20264 500 aaPredicted RBP23.61■■□□□ 1.37
SDC3-202ENST00000339394 PALB2Q86YC2 1186 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 FAM71AQ8IYT1 594 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 DCP1BQ8IZD4 617 aaKnown RBP23.61■■□□□ 1.37
SDC3-202ENST00000339394 ZNF461Q8TAF7 563 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 BAP1Q92560 729 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 EDEM3Q9BZQ6 932 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 TMLHEQ9NVH6 421 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 MTCH2Q9Y6C9 303 aa23.61■■□□□ 1.37
SDC3-202ENST00000339394 GYPCP04921 128 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 SMYD5Q6GMV2 418 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 DEFB123Q8N688 67 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 MYCBPAPQ8TBZ2 947 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 CPLX3Q8WVH0 158 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 IQCDQ96DY2 449 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 HEXIM2Q96MH2 286 aaKnown RBP23.6■■□□□ 1.37
SDC3-202ENST00000339394 TLE6Q9H808 572 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 TSC2P49815 1807 aa23.6■■□□□ 1.37
SDC3-202ENST00000339394 A0A1W2PQJ5 194 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 CYP26A1O43174 497 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 ABLIM3O94929 683 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 PAEPP09466 180 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 IGFBP4P22692 258 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 MRE11P49959 708 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 MDH1BQ5I0G3 518 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 RNF19BQ6ZMZ0 732 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 TMC6Q7Z403 805 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 PCED1BQ96HM7 432 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 PGLYRP2Q96PD5 576 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 GAS2L1Q99501 681 aaPredicted RBP23.59■■□□□ 1.37
SDC3-202ENST00000339394 DNAI2Q9GZS0 605 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 NSUN3Q9H649 340 aaKnown RBP23.59■■□□□ 1.37
SDC3-202ENST00000339394 ACP6Q9NPH0 428 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 CAPN11Q9UMQ6 739 aa23.59■■□□□ 1.37
SDC3-202ENST00000339394 EYSQ5T1H1 3165 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 TGM5O43548 720 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 CLASP2O75122 1294 aaKnown RBP23.58■■□□□ 1.37
SDC3-202ENST00000339394 CLCN1P35523 988 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 SOX5P35711 763 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 STAT1P42224 750 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 NRIP1P48552 1158 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 MAPRE1Q15691 268 aaKnown RBP23.58■■□□□ 1.37
SDC3-202ENST00000339394 NFE2Q16621 373 aaPredicted RBP23.58■■□□□ 1.37
SDC3-202ENST00000339394 PPP2R3CQ969Q6 453 aa23.58■■□□□ 1.37
SDC3-202ENST00000339394 CDX2Q99626 313 aaPredicted RBP23.58■■□□□ 1.37
SDC3-202ENST00000339394 COL4A4P53420 1690 aaPredicted RBP23.58■■□□□ 1.36
SDC3-202ENST00000339394 CALCAP01258 141 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 CASP14P31944 242 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 CLCN4P51793 760 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 SMARCB1Q12824 385 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 DUSP6Q16828 381 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 TCEAL5Q5H9L2 206 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 TPGS2Q68CL5 300 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 LILRA6Q6PI73 481 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 ATAD1Q8NBU5 361 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 FAM49BQ9NUQ9 324 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 AFF4Q9UHB7 1163 aaKnown RBP23.57■■□□□ 1.36
SDC3-202ENST00000339394 KIAA1257Q9ULG3 409 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 MYO6Q9UM54 1294 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 LUC7L2Q9Y383 392 aaKnown RBP23.57■■□□□ 1.36
SDC3-202ENST00000339394 MYO9BQ13459 2157 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 MYO7AQ13402 2215 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 MTMR11A4FU01 709 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 LRRC53A6NM62 1247 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 GFPT2O94808 682 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 VNN2O95498 520 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 ATF2P15336 505 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 CD19P15391 556 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 CYP27A1Q02318 531 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 ADCY1Q08828 1119 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 TRIM14Q14142 442 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 SLC47A2Q86VL8 602 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 PPFIBP1Q86W92 1011 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 ZNF397Q8NF99 534 aaPredicted RBP23.57■■□□□ 1.36
SDC3-202ENST00000339394 MYLPFQ96A32 169 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 CYFIP2Q96F07 1278 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 B3GNT5Q9BYG0 378 aa23.57■■□□□ 1.36
SDC3-202ENST00000339394 XIRP2A4UGR9 3374 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 REV3LO60673 3130 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 SPTBN5Q9NRC6 3674 aaKnown RBP23.56■■□□□ 1.36
SDC3-202ENST00000339394 GLUD1P00367 558 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 SPATA31D3P0C874 917 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 VDRP11473 427 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 CCDC130P13994 396 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 GTF2F1P35269 517 aaKnown RBP eCLIP23.56■■□□□ 1.361e-6■■■■■ 32.6
SDC3-202ENST00000339394 ZBED6P86452 979 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 PTK2Q05397 1052 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 TBX2Q13207 712 aaPredicted RBP23.56■■□□□ 1.36
SDC3-202ENST00000339394 C4orf50Q6ZRC1 276 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 SPATA31D4Q6ZUB0 917 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 GPIHBP1Q8IV16 184 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 FUKQ8N0W3 1084 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 SLC2A14Q8TDB8 520 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 MYLIPQ8WY64 445 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 TFAP2BQ92481 460 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 GUCD1Q96NT3 240 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 CDCA3Q99618 268 aaPredicted RBP23.56■■□□□ 1.36
SDC3-202ENST00000339394 ZSWIM1Q9BR11 485 aa23.56■■□□□ 1.36
SDC3-202ENST00000339394 ABI2Q9NYB9 513 aaPredicted RBP23.56■■□□□ 1.36
SDC3-202ENST00000339394 CDC25BP30305 580 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms