RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 RC3H2Q9HBD1 1191 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 ABCB6Q9NP58 842 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 CYLDQ9NQC7 956 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 ADAM22Q9P0K1 906 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 CACNG4Q9UBN1 327 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 TSPAN16Q9UKR8 245 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 CDH9Q9ULB4 789 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 STRIP2Q9ULQ0 834 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 COG5Q9UP83 839 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 SCINQ9Y6U3 715 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 MICAL3Q7RTP6 2002 aa15.82■□□□□ 0.12
CCDC88C-202ENST00000334448 CARNS1A5YM72 827 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 SYN3O14994 580 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 BUB1O43683 1085 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 DGKIO75912 1065 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 CSF2RAP15509 400 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 PRLRP16471 622 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 LMO2P25791 158 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 RNASELQ05823 741 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 ORC1Q13415 861 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 ANKRD52Q8NB46 1076 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 MSANTD4Q8NCY6 345 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 TOP1MTQ969P6 601 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 HNRNPABQ99729 332 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 RTP3Q9BQQ7 232 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 ACBD6Q9BR61 282 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 MIS12Q9H081 205 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 DPEP3Q9H4B8 488 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 IL23AQ9NPF7 189 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 WDR35Q9P2L0 1181 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 CNOT8Q9UFF9 292 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 LCMT1Q9UIC8 334 aa15.81■□□□□ 0.12
CCDC88C-202ENST00000334448 TSC2P49815 1807 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 M0QYV0 167 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 TRAPPC3O43617 180 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PALMO75781 387 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 AMHP03971 560 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 ITGB1P05556 798 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 RRM1P23921 792 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 BCAT1P54687 386 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PLCB3Q01970 1234 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PDCLQ13371 301 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 GOLGA7BQ2TAP0 167 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PTPN20Q4JDL3 420 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PPP1R26Q5T8A7 1209 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 MMS22LQ6ZRQ5 1243 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 TTC30AQ86WT1 665 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 METTL23Q86XA0 190 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 C12orf29Q8N999 325 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 C3orf20Q8ND61 904 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 ZNF564Q8TBZ8 553 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 ZNF592Q92610 1267 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 ZNF689Q96CS4 500 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 FAM193BQ96PV7 902 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PKMYT1Q99640 499 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 C11orf70Q9BRQ4 267 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 MRPL47Q9HD33 250 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 OSGEPQ9NPF4 335 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 PRDM5Q9NQX1 630 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 DDX43Q9NXZ2 648 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 CTTNBP2NLQ9P2B4 639 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 CYTH4Q9UIA0 394 aa15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 TDRD15B5MCY1 1934 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-202ENST00000334448 BUB1BO60566 1050 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 OAZ2O95190 189 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 EFEMP2O95967 443 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 PTPN1P18031 435 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 NOP2P46087 812 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 BRCC3P46736 316 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 WDR5P61964 334 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 TAP1Q03518 808 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 ELAVL2Q12926 359 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 PPIGQ13427 754 aaKnown RBP eCLIP15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 MAMLD1Q13495 774 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 PPP1R15BQ5SWA1 713 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 MEI1Q5TIA1 1274 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 FAM171BQ6P995 826 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 ERICH1Q86X53 443 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 SLC35F5Q8WV83 523 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 SYT15Q9BQS2 421 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 NUP85Q9BW27 656 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 COLEC11Q9BWP8 271 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 TLR10Q9BXR5 811 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 SLC4A5Q9BY07 1137 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 PARVAQ9NVD7 372 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 MARCH5Q9NX47 278 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 HESX1Q9UBX0 185 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 DNAJB4Q9UDY4 337 aa15.79■□□□□ 0.12
CCDC88C-202ENST00000334448 TBKBP1A7MCY6 615 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 CES2O00748 559 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 NRP1O14786 923 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 HCRTO43612 131 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 ATP1A1P05023 1023 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 GALTP07902 379 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 PDGFRBP09619 1106 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 IBSPP21815 317 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 SCNN1AP37088 669 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 OR1G1P47890 313 aa15.78■□□□□ 0.12
CCDC88C-202ENST00000334448 SLC11A1P49279 550 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms