RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ZNF398Q8TD17 642 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SHC3Q92529 594 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 SERAC1Q96JX3 654 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 NAP1L4Q99733 375 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 POLR3CQ9BUI4 534 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 WDR18Q9BV38 432 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 PKD2L1Q9P0L9 805 aa14.13□□□□□ -0.15
CCDC88C-201ENST00000331194 DENND3A2RUS2 1198 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 DDX39AO00148 427 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 RIMBP2O15034 1052 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 GLRA2P23416 452 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 ALDH18A1P54886 795 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 CENPCQ03188 943 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 MSLNQ13421 630 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 CES4AQ5XG92 561 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 PRR5LQ6MZQ0 368 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 BBOF1Q8ND07 529 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 PPP2R3CQ969Q6 453 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 WDR83Q9BRX9 315 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 SHCBP1LQ9BZQ2 653 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 PDGFDQ9GZP0 370 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 MTO1Q9Y2Z2 717 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC4A7Q9Y6M7 1214 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 MYOCOSA0A1B0GUC4 107 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 CCDC160A6NGH7 325 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 A8MXQ7 604 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 RAP1GDS1P52306 607 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 AP2B1P63010 937 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 GABPAQ06546 454 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 IKQ13123 557 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 NFIL3Q16649 462 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 PAOXQ6QHF9 649 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 OTOP1Q7RTM1 612 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 SDCCAG8Q86SQ7 713 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 MCOLN2Q8IZK6 566 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 TAS1R2Q8TE23 839 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 MTBPQ96DY7 904 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 SENP1Q9P0U3 644 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 ADAMTS6Q9UKP5 1117 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 TBC1D30Q9Y2I9 924 aa14.12□□□□□ -0.15
CCDC88C-201ENST00000331194 SPDYE16A6NNV3 312 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 ALOX15BO15296 676 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 LPXNO60711 386 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 RFX1P22670 979 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 NRLP54845 237 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 ACTR3P61158 418 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC25A3Q00325 362 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PDE1BQ01064 536 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 UBAP2LQ14157 1087 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PRKD1Q15139 912 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC15A2Q16348 729 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 CLEC16AQ2KHT3 1053 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 GPATCH4Q5T3I0 446 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 OR6Y1Q8NGX8 325 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 HELQQ8TDG4 1101 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 FAM20AQ96MK3 541 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 RANBP17Q9H2T7 1088 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 HSPBP1Q9NZL4 362 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PLA2G4CQ9UP65 541 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 TMEM150BA6NC51 233 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 LIASO43766 372 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 DNAJC6O75061 913 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 SERPINB2P05120 415 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PABPC4LP0CB38 370 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PEX2P28328 305 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PRPF39Q86UA1 669 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 TMPRSS6Q8IU80 811 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 MZB1Q8WU39 189 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 C11orf70Q9BRQ4 267 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 PRDM16Q9HAZ2 1276 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 TMCO1Q9UM00 188 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 LAMB2P55268 1798 aa14.11□□□□□ -0.15
CCDC88C-201ENST00000331194 TCRBV7S3A2A0A539 114 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 ARHGAP42A6NI28 874 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CIB2O75838 187 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 FAM155BO75949 473 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SHMT1P34896 483 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC1A1P43005 524 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MFAP3P55082 362 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 KRT72Q14CN4 511 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 EFHC2Q5JST6 749 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 TXNRD3NBQ6F5E7 133 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CDHR3Q6ZTQ4 885 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 RHPN2Q8IUC4 686 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 ARL10Q8N8L6 244 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 CCDC124Q96CT7 223 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 TUBB6Q9BUF5 446 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MAF1Q9H063 256 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 VPS11Q9H270 941 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 NHSQ6T4R5 1651 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 BTAF1O14981 1849 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 WNK3Q9BYP7 1800 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PRR5-ARHGAP8B1AHC4 643 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 PENKP01210 267 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 ARHGAP8P85298 464 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MAP3K10Q02779 954 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MED21Q13503 144 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 RALGPS1Q5JS13 557 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 SLC10A5Q5PT55 438 aa14.1□□□□□ -0.15
CCDC88C-201ENST00000331194 MFSD4BQ5TF39 518 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms