RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CCZ1P86791 482 aaPredicted RBP14.83□□□□□ -0.04
COL7A1-201ENST00000328333 SGMS1Q86VZ5 419 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 RNF25Q96BH1 459 aaPredicted RBP14.83□□□□□ -0.04
COL7A1-201ENST00000328333 TMEM79Q9BSE2 394 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 INTS2Q9H0H0 1204 aaKnown RBP14.83□□□□□ -0.04
COL7A1-201ENST00000328333 MUTP22033 750 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 ADARP55265 1226 aaKnown RBP14.83□□□□□ -0.04
COL7A1-201ENST00000328333 ARID5BQ14865 1188 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 CYP51A1Q16850 503 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 KCNV1Q6PIU1 500 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 BTBD3Q9Y2F9 522 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 MEI4A8MW99 385 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 SUPT3HB4E1H0 165 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 FDX1P10109 184 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 SNRNP27Q8WVK2 155 aaKnown RBP14.83□□□□□ -0.04
COL7A1-201ENST00000328333 RALAP11233 206 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 RAB25P57735 213 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 POU4F1Q01851 419 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 GTF2H3Q13889 308 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 SUPT20HL1Q3ZLR7 823 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 LRRC74BQ6ZQY2 392 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 KIAA0825Q8IV33 1275 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 SAR1AQ9NR31 198 aa14.83□□□□□ -0.04
COL7A1-201ENST00000328333 DFFAO00273 331 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 FSBPO95073 299 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 NPR3P17342 541 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 GYG1P46976 350 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 XRCC4Q13426 336 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 USP39Q53GS9 565 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 KRT77Q7Z794 578 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 SULF1Q8IWU6 871 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 MPP4Q96JB8 637 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 AVENQ9NQS1 362 aaPredicted RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RGS18Q9NS28 235 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 TMEM51Q9NW97 253 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 COMMD8Q9NX08 183 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ZSWIM5Q9P217 1185 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 INPP5FQ9Y2H2 1132 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 UBA6A0AVT1 1052 aaPredicted RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 STIP1P31948 543 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 CHI3L2Q15782 390 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 UNC45BQ8IWX7 931 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 TRPC4APQ8TEL6 797 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ARMC7Q9H6L4 198 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 NCKIPSDQ9NZQ3 722 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ACADSBP45954 432 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ROR2Q01974 943 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 IZUMO2Q6UXV1 221 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ZBTB49Q6ZSB9 765 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 HES6Q96HZ4 224 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 WDR12Q9GZL7 423 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ZC3H13Q5T200 1668 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 FAM170AA1A519 330 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 SAGE2PA6NJ88 616 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 H3BMM5 538 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 CACNA2D1P54289 1103 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 PEX3P56589 373 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 NAPEPLDQ6IQ20 393 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RPL26L1Q9UNX3 145 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 NRKQ7Z2Y5 1582 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 FAM98BQ52LJ0 330 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 EAPPQ56P03 285 aaPredicted RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 WDR36Q8NI36 951 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 DGCR14Q96DF8 476 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 C6orf62Q9GZU0 229 aaPredicted RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RBAKQ9NYW8 714 aaPredicted RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 NCK2O43639 380 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 ASNSP08243 561 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RAB6BQ9NRW1 208 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 VTI1BQ9UEU0 232 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 SLC24A2Q9UI40 661 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 EMSYQ7Z589 1322 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 CDHR2Q9BYE9 1310 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 GLRA3O75311 464 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 PPIDQ08752 370 aaKnown RBP14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RIPPLY1Q0D2K3 151 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 GADL1Q6ZQY3 521 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 RASGRP4Q8TDF6 673 aa14.82□□□□□ -0.04
COL7A1-201ENST00000328333 USP27XA6NNY8 438 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 SYNCRIPO60506 623 aaKnown RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 CCT3P49368 545 aaKnown RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 BTKQ06187 659 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ALX1Q15699 326 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 AGR3Q8TD06 166 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MKNK1Q9BUB5 465 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MAPRE3Q9UPY8 281 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 PHKA1P46020 1223 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 NDUFAF6Q330K2 333 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MDM1Q8TC05 714 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 FNIP1Q8TF40 1166 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 RNFT2Q96EX2 444 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 C7orf25Q9BPX7 421 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 STK32BQ9NY57 414 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 SH3BP4Q9P0V3 963 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 DAPK2Q9UIK4 370 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MED14O60244 1454 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ATP6V1G2O95670 118 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 IL6STP40189 918 aaPredicted RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 QARSP47897 775 aaKnown RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 CCDC153Q494R4 210 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms