RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NELL2Q99435 816 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 MPHOSPH6Q99547 160 aaKnown RBP4.09□□□□□ -1.75
HMGB1-201ENST00000326004 ADAM2Q99965 735 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 MESP1Q9BRJ9 268 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 TTYH3Q9C0H2 523 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 NRDE2Q9H7Z3 1164 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 INTS13Q9NVM9 706 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 MAP3K2Q9Y2U5 619 aa4.09□□□□□ -1.75
HMGB1-201ENST00000326004 TRGV11A0A075B6L2 103 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 A0A0B4J269 797 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TMEM233B4DJY2 109 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 F8W8V4 182 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 NCANO14594 1321 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 DCLK1O15075 740 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TRIAP1O43715 76 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 INMTO95050 263 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 ZFPL1O95159 310 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 MT-ND5P03915 603 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TXNP10599 105 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TSHRP16473 764 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 CHRM3P20309 590 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TNFSF4P23510 183 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 PPIFP30405 207 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 PXNP49023 591 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 CARSP49589 748 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 BLOC1S1P78537 153 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 HTRA4P83105 476 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 MC2RQ01718 297 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TUBB3Q13509 450 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 MORC3Q14149 939 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 GEN1Q17RS7 908 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 INSCQ1MX18 579 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 LSM12Q3MHD2 195 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 LY6G5CQ5SRR4 150 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TOGARAM2Q6ZUX3 1019 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 SPRED1Q7Z699 444 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 MORC1Q86VD1 984 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 YAF2Q8IY57 180 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 FAM9AQ8IZU1 332 aaPredicted RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 CCDC33Q8N5R6 958 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 RNF152Q8N8N0 203 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 ATP11CQ8NB49 1132 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 DEPTORQ8TB45 409 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 BRI3BPQ8WY22 251 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 TMEM125Q96AQ2 219 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 NACC2Q96BF6 587 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 SGCZQ96LD1 299 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 RPS6KC1Q96S38 1066 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 PPP1R9BQ96SB3 815 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 STK31Q9BXU1 1019 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 DHX36Q9H2U1 1008 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 UNKLQ9H9P5 680 aaKnown RBP4.08□□□□□ -1.76
HMGB1-201ENST00000326004 XPNPEP3Q9NQH7 507 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 GPRC5BQ9NZH0 403 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 MYRFQ9Y2G1 1151 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 HS3ST4Q9Y661 456 aa4.08□□□□□ -1.76
HMGB1-201ENST00000326004 CENPVL1A0A0U1RR11 272 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 LOC102723971A0A1B0GUV8 181 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 A0A1W2PPC4 97 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 CLCA1A8K7I4 914 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 F5H697 171 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 PRRG2O14669 202 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 APOL1O14791 398 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 THAP12O43422 761 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 PEX14O75381 377 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 RASSF9O75901 435 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 SPDEFO95238 335 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 SRGNP10124 158 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF134P52741 427 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 LILRA4P59901 499 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 DGCR2P98153 550 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 KRT17Q04695 432 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 CD300EQ496F6 205 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-201ENST00000326004 DGKKQ5KSL6 1271 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 ABHD17BQ5VST6 288 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 IZUMO3Q5VZ72 239 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 KCNV1Q6PIU1 500 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 TMEM108Q6UXF1 575 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 BEND5Q7L4P6 421 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 LIX1LQ8IVB5 337 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 FAM109AQ8N4B1 249 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 PROKR1Q8TCW9 393 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 SMCR8Q8TEV9 937 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-201ENST00000326004 RAPGEF4Q8WZA2 1011 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 PTDSS2Q9BVG9 487 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 SELENOOQ9BVL4 669 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 EIF2AQ9BY44 585 aaKnown RBP4.07□□□□□ -1.76
HMGB1-201ENST00000326004 CHST8Q9H2A9 424 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 SMOC2Q9H3U7 446 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 TBCCD1Q9NVR7 557 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 MYO1AQ9UBC5 1043 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF212Q9UDV6 495 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 ITGB1BP2Q9UKP3 347 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 HDAC9Q9UKV0 1011 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-201ENST00000326004 REXO2Q9Y3B8 237 aaKnown RBP4.07□□□□□ -1.76
HMGB1-201ENST00000326004 COMMD10Q9Y6G5 202 aa4.07□□□□□ -1.76
HMGB1-201ENST00000326004 POLR2AP24928 1970 aaKnown RBP4.06□□□□□ -1.76
HMGB1-201ENST00000326004 UNC119BA6NIH7 251 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 AREL1O15033 823 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms