RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 SH2D3CQ8N5H7 860 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 SLC7A14Q8TBB6 771 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 CCDC110Q8TBZ0 833 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 SNF8Q96H20 258 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 ERP44Q9BS26 406 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 KLC2Q9H0B6 622 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 UMODL1Q5DID0 1318 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 A6NNZ2 444 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 PQBP1O60828 265 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 GLI1P08151 1106 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 RBP3P10745 1247 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 PDIA2Q13087 525 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 BYSLQ13895 437 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 P3H1Q32P28 736 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 TUBB8Q3ZCM7 444 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 ZBED8Q8IZ13 594 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 ARRDC4Q8NCT1 418 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 SPATA18Q8TC71 538 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 TMEM106CQ9BVX2 250 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 NXF3Q9H4D5 531 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 ANKZF1Q9H8Y5 726 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 MLXIPLQ9NP71 852 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 CPSF3Q9UKF6 684 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 COL2A1P02458 1487 aaPredicted RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 GPR25O00155 361 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 C2CD2LO14523 706 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 PYGMP11217 842 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 CALRP27797 417 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 ARL4CP56559 192 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 PDE1BQ01064 536 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 DEUP1Q05D60 604 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 CRHR2Q13324 411 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 MICALL1Q8N3F8 863 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 CASKIN2Q8WXE0 1202 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 LPPQ93052 612 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 NTPCRQ9BSD7 190 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 AJAP1Q9UKB5 411 aaPredicted RBP9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 PCDHGC5Q9Y5F6 944 aa9.77□□□□□ -0.85
TMEM39A-201ENST00000319172 APOL1O14791 398 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 KCNN4O15554 427 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 HMBSP08397 361 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 NCAM1P13591 858 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 COILP38432 576 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 CCT5P48643 541 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 MXRA7P84157 204 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 CCDC38Q502W7 563 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 BZW1Q7L1Q6 419 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 DEFB128Q7Z7B8 93 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 RXFP2Q8WXD0 754 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SMC6Q96SB8 1091 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 ADAM2Q99965 735 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 PPP1R12CQ9BZL4 782 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 HMX1Q9NP08 348 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 KPNA7A9QM74 516 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 H2AFXP16104 143 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 MLH1P40692 756 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SLC12A2P55011 1212 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 EIF3BP55884 814 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 MAGOHP61326 146 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 ARHGAP1Q07960 439 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 PRPSAP1Q14558 356 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 MDH1BQ5I0G3 518 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 DENND1BQ6P3S1 775 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 ANKMY2Q8IV38 441 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SCUBE3Q8IX30 993 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 PCDHB18PQ96TA0 734 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SEPT5Q99719 369 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SALL4Q9UJQ4 1053 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 TRPV2Q9Y5S1 764 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 LAMA4Q16363 1823 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 ASS1P00966 412 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 MARCKSL1P49006 195 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SCNN1GP51170 649 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 C1QBPQ07021 282 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 SETDB1Q15047 1291 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 NFIL3Q16649 462 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 B4GALNT4Q76KP1 1039 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 FAM131BQ86XD5 332 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 NPLOC4Q8TAT6 608 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 ZNF518BQ9C0D4 1074 aa9.76□□□□□ -0.85
TMEM39A-201ENST00000319172 I3L4J1 428 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 MICAL2O94851 1124 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 LSM8O95777 96 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 MAP3K7CLP57077 242 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 MGAT5BQ3V5L5 792 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 CFAP157Q5JU67 520 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 BEND6Q5SZJ8 279 aaPredicted RBP9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 SRRM1Q8IYB3 904 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 GDAP1Q8TB36 358 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 CDKL2Q92772 493 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 DDX43Q9NXZ2 648 aaKnown RBP9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 KIAA1257Q9ULG3 409 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 WDR91A4D1P6 747 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 F8VP50 259 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 H3BRJ5 948 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 BNIP3LO60238 219 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 SEPT6Q14141 434 aa9.75□□□□□ -0.85
TMEM39A-201ENST00000319172 TMEM63BQ5T3F8 832 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms