RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 LPXNO60711 386 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 RNF8O76064 485 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 POLR2BP30876 1174 aaKnown RBP11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ARFIP2P53365 341 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 NOMO3P69849 1222 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 EMC2Q15006 297 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 SLC1A5Q15758 541 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 FAM182AQ5T1J6 154 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 SLFN12LQ6IEE8 588 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 SPOCD1Q6ZMY3 1216 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 EP400NLQ6ZTU2 488 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 CLMNQ96JQ2 1002 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 RILPQ96NA2 401 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 MCF2LO15068 1137 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 KCNA3P22001 575 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 GEMIN4P57678 1058 aaKnown RBP11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ZACNQ401N2 412 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 C6orf163Q5TEZ5 329 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 SLC39A4Q6P5W5 647 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 DARS2Q6PI48 645 aaKnown RBP11.05□□□□□ -0.64
COL3A1-202ENST00000317840 C17orf75Q9HAS0 396 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 CHKBQ9Y259 395 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 UMODL1Q5DID0 1318 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 I3L4J1 428 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF862O60290 1169 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 CPA2P48052 419 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 IRX4P78413 519 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 OTUD4Q01804 1114 aaKnown RBP11.05□□□□□ -0.64
COL3A1-202ENST00000317840 TCEAL1Q15170 157 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 CDO1Q16878 200 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 TFDP3Q5H9I0 405 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 FAM71DQ8N9W8 422 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 TCP10LQ8TDR4 215 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 FBXO41Q8TF61 875 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF516Q92618 1163 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF75CPQ92670 426 aaPredicted RBP11.05□□□□□ -0.64
COL3A1-202ENST00000317840 CFAP36Q96G28 342 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 PAFAH2Q99487 392 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 ST6GALNAC4Q9H4F1 302 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 EBF2Q9HAK2 575 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 NRBP2Q9NSY0 501 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 GPRC5DQ9NZD1 345 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 HEY2Q9UBP5 337 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 KCNG1Q9UIX4 513 aa11.05□□□□□ -0.64
COL3A1-202ENST00000317840 GRIN3BO60391 1043 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 KRT3P12035 628 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 VCPP55072 806 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ACTR2P61160 394 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 PSMC1P62191 440 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ORC1Q13415 861 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MORF4L2Q15014 288 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 EFTUD2Q15029 972 aaKnown RBP eCLIP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MON1BQ7L1V2 547 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 NIPA1Q7RTP0 329 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 CCDC60Q8IWA6 550 aaPredicted RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 EMC1Q8N766 993 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 PPM1NQ8N819 430 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 FBXO36Q8NEA4 188 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 OR5B17Q8NGF7 314 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 CLEC4DQ8WXI8 215 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 TSSK1BQ9BXA7 367 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 STARD13Q9Y3M8 1113 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 NUB1Q9Y5A7 615 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ACTL7BQ9Y614 415 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MAD1L1Q9Y6D9 718 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 PIK3R2O00459 728 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 CSDE1O75534 798 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 LYPLA2O95372 231 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 LDHAP00338 332 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 KITP10721 976 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MGAT5Q09328 741 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 KLHL38Q2WGJ6 581 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ZBTB41Q5SVQ8 909 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 B3GNT9Q6UX72 402 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 SLITRK1Q96PX8 696 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 APOL6Q9BWW8 343 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 LGALS13Q9UHV8 139 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 SYNPO2Q9UMS6 1093 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 SMIM24O75264 130 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MAP3K6O95382 1288 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ASMTLO95671 621 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 VGLL4Q14135 290 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 PDK4Q16654 411 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MDH1BQ5I0G3 518 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 NAIF1Q69YI7 327 aaPredicted RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 TEX2Q8IWB9 1127 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 LRRC71Q8N4P6 559 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 CFAP61Q8NHU2 1237 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 FAM111AQ96PZ2 611 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 GMLQ99445 158 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 SLC13A1Q9BZW2 595 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MTMR12Q9C0I1 747 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 MANSC1Q9H8J5 431 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 RNPEPL1Q9HAU8 725 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF302Q9NR11 478 aa11.04□□□□□ -0.64
COL3A1-202ENST00000317840 METTL5Q9NRN9 209 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 XPO7Q9UIA9 1087 aaKnown RBP11.04□□□□□ -0.64
COL3A1-202ENST00000317840 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.03□□□□□ -0.64
COL3A1-202ENST00000317840 CCDC195A0A1B0GUA6 201 aa11.03□□□□□ -0.64
COL3A1-202ENST00000317840 C19orf81C9J6K1 198 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms