RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SPATA5L1Q9BVQ7 753 aa4.19□□□□□ -1.74
USH2A-201ENST00000307340 SSU72Q9NP77 194 aaKnown RBP4.19□□□□□ -1.74
USH2A-201ENST00000307340 ZNF646O15015 1829 aaPredicted RBP4.19□□□□□ -1.74
USH2A-201ENST00000307340 UBAP1LF5GYI3 381 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PSMA2P25787 234 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ZAP70P43403 619 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 MARSP56192 900 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 MPP3Q13368 585 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 KRT72Q14CN4 511 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 C12orf60Q5U649 245 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ZNF410Q86VK4 478 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CCDC85AQ96PX6 553 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 SLC2A11Q9BYW1 496 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ARMT1Q9H993 441 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 MIA3Q5JRA6 1907 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 POTECB2RU33 542 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PLS3P13797 630 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 AKR1B1P15121 316 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 RFC1P35251 1148 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 KRT6CP48668 564 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 RAP1GDS1P52306 607 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 THOC7Q6I9Y2 204 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 SKAP1Q86WV1 359 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 TTLL11Q8NHH1 800 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 NR4A3Q92570 626 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 IL22Q9GZX6 179 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 SLC38A10Q9HBR0 1119 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 COL1A1P02452 1464 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 ARAP2Q8WZ64 1704 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 C7P10643 843 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 C1QBPQ07021 282 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 STX3Q13277 289 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 NCF4Q15080 339 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 STYK1Q6J9G0 422 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 C16orf87Q6PH81 154 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 DARS2Q6PI48 645 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 BBS7Q8IWZ6 715 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 MB21D2Q8IYB1 491 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 PIK3C2AO00443 1686 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CSF1RP07333 972 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 FCER1AP12319 257 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 HNRNPH1P31943 449 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 DDR1Q08345 913 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 LMBRD2Q68DH5 695 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 SPOPLQ6IQ16 392 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CYB5D1Q6P9G0 228 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PACS1Q6VY07 963 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PLD6Q8N2A8 252 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 SLC35F6Q8N357 371 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 FAM205AQ6ZU69 1335 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 WFS1O76024 890 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 DDHD2O94830 711 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 NFKB1P19838 968 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 IL12AP29459 219 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PPP3CCP48454 512 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 RBP5P82980 135 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PTPAQ15257 358 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 RNF219Q5W0B1 726 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 RBBP8NLQ8NC74 664 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 NKX2-3Q8TAU0 364 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 MMS19Q96T76 1030 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 E5RI56 91 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 IFNB1P01574 187 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CRABP2P29373 138 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 SREBF1P36956 1147 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 TXNL4AP83876 142 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 PHKG1Q16816 387 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CACHD1Q5VU97 1274 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ZCCHC2Q9C0B9 1178 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 ZNF180Q9UJW8 692 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 KCNH4Q9UQ05 1017 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 SMIM31A0A1B0GVY4 71 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 UCHL3P15374 230 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 PPIBP23284 216 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 CRKLP46109 303 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 GCLCP48506 637 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 SMIM11AP58511 58 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 SV2CQ496J9 727 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 SWT1Q5T5J6 900 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 CEP70Q8NHQ1 597 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ZNF483Q8TF39 744 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 CATSPER2Q96P56 530 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ADAMTS1Q9UHI8 967 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 C2orf81A6NN90 581 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 CBFA2T3O75081 653 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 HIST1H2AGP0C0S8 130 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 HIST1H2ADP20671 130 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 MAP4P27816 1152 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 NFE2Q16621 373 aaPredicted RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 RRM2BQ7LG56 351 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ALDH16A1Q8IZ83 802 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 COA7Q96BR5 231 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 TUBGCP3Q96CW5 907 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 HIST1H2AHQ96KK5 128 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 HIST1H2AJQ99878 128 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 H2AFJQ9BTM1 129 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 ISCA1Q9BUE6 129 aa4.18□□□□□ -1.74
USH2A-201ENST00000307340 DHX33Q9H6R0 707 aaKnown RBP4.18□□□□□ -1.74
USH2A-201ENST00000307340 PCDHB4Q9Y5E5 795 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms