RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MAFGO15525 162 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ENTPD5O75356 428 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 DGAT1O75907 488 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CYP3A4P08684 503 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 WEE2P0C1S8 567 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 PGM5Q15124 567 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 XRRA1Q6P2D8 792 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ARHGAP22Q7Z5H3 698 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 NDUFAF2Q8N183 169 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CHST13Q8NET6 341 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 SLC5A5Q92911 643 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 PI4K2AQ9BTU6 479 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 GTSE1Q9NYZ3 720 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 MID2Q9UJV3 735 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CYP3A7-CYP3A51PA0A087WV96 503 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 UPP2O95045 317 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CYP3A7P24462 503 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 DSG3P32926 999 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 CIITAP33076 1130 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 ABCD1P33897 745 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 STAT5BP51692 787 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 MIIPQ5JXC2 388 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 SCG3Q8WXD2 468 aaKnown RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 E2F7Q96AV8 911 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 GPRASP2Q96D09 838 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 SPATA33Q96N06 139 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 WDR18Q9BV38 432 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 FHDC1Q9C0D6 1143 aaPredicted RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 AGO4Q9HCK5 861 aaKnown RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 ZC3H7BQ9UGR2 993 aaKnown RBP16.07■□□□□ 0.16
SHH-201ENST00000297261 BAG5Q9UL15 447 aa16.07■□□□□ 0.16
SHH-201ENST00000297261 NRAPQ86VF7 1730 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 PIK3CDO00329 1044 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 KRT16P08779 473 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 FLT3P36888 993 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 ROR1Q01973 937 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 OCA2Q04671 838 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 CHI3L2Q15782 390 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 ECM1Q16610 540 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 FAM167AQ96KS9 214 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 KIFC3Q9BVG8 833 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 FOXP3Q9BZS1 431 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 MAP3K20Q9NYL2 800 aaKnown RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 XPO7Q9UIA9 1087 aaKnown RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 E2F8A0AVK6 867 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 ZNF263O14978 683 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 SGPL1O95470 568 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 TNFRSF8P28908 595 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 AADACL2Q6P093 401 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 IYDQ6PHW0 289 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 APLFQ8IW19 511 aaPredicted RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 PPP2R3BQ9Y5P8 575 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 KPNA7A9QM74 516 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 SH3BP5O60239 455 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 ISLR2Q6UXK2 745 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 RYBPQ8N488 228 aaPredicted RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 C7orf43Q8WVR3 580 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 CCT7Q99832 543 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 CHCHD3Q9NX63 227 aaKnown RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 NUB1Q9Y5A7 615 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 TRIM49D1C9J1S8 452 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 GEMIN4P57678 1058 aaKnown RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 SESN2P58004 480 aaPredicted RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 AP1B1Q10567 949 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 RRP1BQ14684 758 aaKnown RBP16.06■□□□□ 0.16
SHH-201ENST00000297261 CNGA2Q16280 664 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 TRIM67Q6ZTA4 783 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 SCUBE1Q8IWY4 988 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 RCOR2Q8IZ40 523 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 RNF169Q8NCN4 708 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 NLGN2Q8NFZ4 835 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 KCNK16Q96T55 309 aa16.06■□□□□ 0.16
SHH-201ENST00000297261 DCDC2CA8MYV0 355 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 M0R2N6 131 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 PYGMP11217 842 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 STMN1P16949 149 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 TTLL4Q14679 1199 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 KIF19Q2TAC6 998 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 NBPF20Q3BBV1 942 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 SLFN12LQ6IEE8 588 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 ETNPPLQ8TBG4 499 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 TMA16Q96EY4 203 aaKnown RBP16.05■□□□□ 0.16
SHH-201ENST00000297261 MKNK1Q9BUB5 465 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 CCDC90BQ9GZT6 254 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 SRRM3A6NNA2 597 aaPredicted RBP16.05■□□□□ 0.16
SHH-201ENST00000297261 CCNHP51946 323 aaPredicted RBP16.05■□□□□ 0.16
SHH-201ENST00000297261 SLC12A3P55017 1021 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 XRCC4Q13426 336 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 SMTNL2Q2TAL5 461 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 EXT2Q93063 718 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 WHRNQ9P202 907 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 NFKBIEO00221 500 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 CST8O60676 142 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 RBP3P10745 1247 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 ACTR2P61160 394 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 ENOSF1Q7L5Y1 443 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 RSPH3Q86UC2 560 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 EXOC8Q8IYI6 725 aa16.05■□□□□ 0.16
SHH-201ENST00000297261 PSPC1Q8WXF1 523 aaKnown RBP16.05■□□□□ 0.16
SHH-201ENST00000297261 OPTNQ96CV9 577 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms