RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TPCN2Q8NHX9 752 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 HASPINQ8TF76 798 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ELMO3Q96BJ8 720 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 OTUB1Q96FW1 271 aaPredicted RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 POLLQ9UGP5 575 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 FAM32AQ9Y421 112 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 A0A1W2PQJ5 194 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 PSMD3O43242 534 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 TAF6P49848 677 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ERVK-24P63145 666 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 BTKQ06187 659 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 TRIP10Q15642 601 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 TRIM65Q6PJ69 517 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 DENND5BQ6ZUT9 1274 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 PRPF39Q86UA1 669 aaKnown RBP11.95□□□□□ -0.5
USP53-201ENST00000274030 CHST13Q8NET6 341 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 ENGASEQ8NFI3 743 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 BLOC1S5Q8TDH9 187 aa11.95□□□□□ -0.5
USP53-201ENST00000274030 MAFGO15525 162 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 RHOBTB1O94844 696 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ARIH2O95376 493 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 PLA2G4AP47712 749 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 TRADDQ15628 312 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ACAD10Q6JQN1 1059 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 TRPM8Q7Z2W7 1104 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 WNK4Q96J92 1243 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 NUDT12Q9BQG2 462 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 CDYLQ9Y232 598 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 AP3B1O00203 1094 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 MAN1A2O60476 641 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 EPB42P16452 691 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 RAP1GAPP47736 663 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 SOX10P56693 466 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 CAPRIN2Q6IMN6 1127 aaKnown RBP11.94□□□□□ -0.5
USP53-201ENST00000274030 ARID3BQ8IVW6 561 aaPredicted RBP11.94□□□□□ -0.5
USP53-201ENST00000274030 WDR48Q8TAF3 677 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 KCTD10Q9H3F6 313 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 WDCPQ9H6R7 721 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 C1orf167Q5SNV9 1468 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ALDH1A3P47895 512 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 TTC39BQ5VTQ0 682 aaPredicted RBP11.94□□□□□ -0.5
USP53-201ENST00000274030 TXNRD3Q86VQ6 643 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 SLC13A5Q86YT5 568 aaPredicted RBP11.94□□□□□ -0.5
USP53-201ENST00000274030 E2F7Q96AV8 911 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 CPB2Q96IY4 423 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 SLITRK1Q96PX8 696 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ISCUQ9H1K1 167 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 MANSC1Q9H8J5 431 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 VIPAS39Q9H9C1 493 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 CAPN10Q9HC96 672 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 DOLKQ9UPQ8 538 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 HDAC4P56524 1084 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ANKRD13AQ8IZ07 590 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 RPRD1AQ96P16 312 aaPredicted RBP11.94□□□□□ -0.5
USP53-201ENST00000274030 FAM111AQ96PZ2 611 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 ERGIC2Q96RQ1 377 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 APOL2Q9BQE5 337 aa11.94□□□□□ -0.5
USP53-201ENST00000274030 TPST1O60507 370 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 SERPINB4P48594 390 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 LAMC2Q13753 1193 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 BTNL9Q6UXG8 535 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 FBXO16Q8IX29 292 aaPredicted RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 PPIL6Q8IXY8 311 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 TFB1MQ8WVM0 346 aaKnown RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 GRID1Q9ULK0 1009 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 JCADQ9P266 1359 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 FOXP2O15409 715 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 SKAP2O75563 359 aaPredicted RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 AP1G2O75843 785 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 ICAM1P05362 532 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 DDX39BQ13838 428 aaKnown RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 SNX17Q15036 470 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 MEI1Q5TIA1 1274 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 BTN2A2Q8WVV5 523 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 KRT35Q92764 455 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 STAMBPL1Q96FJ0 436 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 PCDHB8Q9UN66 801 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 PCDHB7Q9Y5E2 793 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 H0Y626 953 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 CETPP11597 493 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 VCAM1P19320 739 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 HSD17B3P37058 310 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 PWP1Q13610 501 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 SRLQ86TD4 932 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 C17orf80Q9BSJ5 609 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP53-201ENST00000274030 NCF1BA6NI72 391 aaPredicted RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 NCF1CA8MVU1 366 aaPredicted RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 SRP72O76094 671 aaKnown RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 NCF1P14598 390 aaPredicted RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 SOAT1P35610 550 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 CAP2P40123 477 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 MED21Q13503 144 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 EPS8L3Q8TE67 593 aaKnown RBP11.93□□□□□ -0.5
USP53-201ENST00000274030 CASKIN2Q8WXE0 1202 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 FAM162AQ96A26 154 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 PKD2L2Q9NZM6 624 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 ZNF711Q9Y462 761 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 RPS6KL1Q9Y6S9 549 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 TGM2P21980 687 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms