RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 MAGEC3Q8TD91 643 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 KLF6Q99612 283 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 TRIM56Q9BRZ2 755 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 SLC13A1Q9BZW2 595 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 TMEM117Q9H0C3 514 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 PDHXO00330 501 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 P4HA2O15460 535 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 TNNC2P02585 160 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 CDC42EP1Q00587 391 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 KPNB1Q14974 876 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 MMEL1Q495T6 779 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 ACCSLQ4AC99 568 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 DAB2IPQ5VWQ8 1189 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 IER5Q5VY09 327 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 FAF2Q96CS3 445 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 HIC2Q96JB3 615 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 PPCSQ9HAB8 311 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 RRAGCQ9HB90 399 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 CYP26B1Q9NR63 512 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 GTF3C4Q9UKN8 822 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 MTO1Q9Y2Z2 717 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 SLC4A7Q9Y6M7 1214 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 RPTORQ8N122 1335 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 RASSF9O75901 435 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 SRGAP2CP0DJJ0 459 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 CALB2P22676 271 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 PSMA2P25787 234 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 EMC2Q15006 297 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 PLEKHH3Q7Z736 793 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 FAM213AQ9BRX8 229 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 TTYH3Q9C0H2 523 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 SALL4Q9UJQ4 1053 aa12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 ZNF214Q9UL59 606 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-201ENST00000266546 QSER1Q2KHR3 1735 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 ARHGAP10A1A4S6 786 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 SPATA31C2B4DYI2 1134 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 GMNNO75496 209 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 P4HA1P13674 534 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 PHKA2P46019 1235 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 CPA2P48052 419 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 INHBEP58166 350 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 DEUP1Q05D60 604 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 CNGA2Q16280 664 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 DNAL1Q4LDG9 190 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 ZBTB33Q86T24 672 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 HACE1Q8IYU2 909 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 CCDC97Q96F63 343 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 TMEM237Q96Q45 408 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 HEY2Q9UBP5 337 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 ZNF536O15090 1300 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 H3BRJ5 948 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 ZCCHC18P0CG32 403 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 GSCP56915 257 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 OSTNP61366 133 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 LAMB3Q13751 1172 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 NBPF20Q3BBV1 942 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 LACTB2Q53H82 288 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 STK32AQ8WU08 396 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 SPIRE2Q8WWL2 714 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 BTBD6Q96KE9 485 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 SCYL1Q96KG9 808 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 RNPEPL1Q9HAU8 725 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 VTA1Q9NP79 307 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 KLHL11Q9NVR0 708 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 IP6K2Q9UHH9 426 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 NAALADL1Q9UQQ1 740 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 SAT1P21673 171 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 YY1P25490 414 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 PTPN4P29074 926 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 FLT3P36888 993 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 AP3M2P53677 418 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 TFAMQ00059 246 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 KCTD19Q17RG1 926 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 TAF1BQ53T94 588 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 PLA2G4FQ68DD2 849 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 ENOSF1Q7L5Y1 443 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 TMEM35BQ8NCS4 154 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 CCT6BQ92526 530 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 LENG9Q96B70 501 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 MRPL4Q9BYD3 311 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 AKT3Q9Y243 479 aa12.09□□□□□ -0.47
CLSTN3-201ENST00000266546 NKRFO15226 690 aaKnown RBP eCLIP12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 ZBED1O96006 694 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 HNRNPCP07910 306 aaKnown RBP eCLIP12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 NUDT17P0C025 328 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 RALAP11233 206 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 KRT4P19013 534 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 TNFAIP2Q03169 654 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 ZNF394Q53GI3 561 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 GPD1LQ8N335 351 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 IL31RAQ8NI17 732 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 DEPDC1BQ8WUY9 529 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 MANSC1Q9H8J5 431 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 ERAP1Q9NZ08 941 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 KCNH4Q9UQ05 1017 aa12.08□□□□□ -0.47
CLSTN3-201ENST00000266546 GTPBP10A4D1E9 387 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-201ENST00000266546 ALDH18A1P54886 795 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-201ENST00000266546 SLC12A2P55011 1212 aa12.08□□□□□ -0.48
CLSTN3-201ENST00000266546 CENPCQ03188 943 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms