RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 FOXN3O00409 490 aaPredicted RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 GTF2H1P32780 548 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 ZNF76P36508 570 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 MAGEA4P43358 317 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 EMP3P54852 163 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 CYP4A11Q02928 519 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 SEPT7Q16181 437 aaKnown RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 CDC42EP5Q6NZY7 148 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 C1orf228Q6PIY5 440 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 TDRPQ86YL5 185 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 CPNE8Q86YQ8 564 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 TMPRSS6Q8IU80 811 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 RELL1Q8IUW5 271 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 C12orf56Q8IXR9 622 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 BBOF1Q8ND07 529 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 GAB3Q8WWW8 586 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 ATG4AQ8WYN0 398 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 PRICKLE1Q96MT3 831 aaPredicted RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 SIKE1Q9BRV8 207 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 TMEM120AQ9BXJ8 343 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 TSPYL2Q9H2G4 693 aaPredicted RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 GPAMQ9HCL2 828 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 DDX4Q9NQI0 724 aaKnown RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 CHST7Q9NS84 486 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 FSCN2O14926 492 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 CYP1A2P05177 515 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 MAPTP10636 758 aaKnown RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 MLH1P40692 756 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 CHN2P52757 468 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 SNRPFP62306 86 aaKnown RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 CCDC92Q53HC0 331 aaPredicted RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 TMCO4Q5TGY1 634 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 KLHDC10Q6PID8 442 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.78□□□□□ -0.2
NUP54-201ENST00000264883 CEP70Q8NHQ1 597 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 RSPH1Q8WYR4 309 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 NACC1Q96RE7 527 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 FIZ1Q96SL8 496 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 OXCT2Q9BYC2 517 aaPredicted RBP13.78□□□□□ -0.2
NUP54-201ENST00000264883 VPS33BQ9H267 617 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 TMEM206Q9H813 350 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 PIM2Q9P1W9 311 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 GTF3C4Q9UKN8 822 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 ZNF711Q9Y462 761 aa13.78□□□□□ -0.2
NUP54-201ENST00000264883 A0A1W2PPM1 405 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 H3BRJ5 948 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 FKBP6O75344 327 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 VCLP18206 1134 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 RRM1P23921 792 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 ADRA1DP25100 572 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 YY1P25490 414 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 SERPINB8P50452 374 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 CYP2J2P51589 502 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 PDK3Q15120 406 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 LRRC36Q1X8D7 754 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 SFT2D3Q587I9 215 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 C1orf146Q5VVC0 180 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 GMCL1P1Q8NEA9 526 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 SPIRE2Q8WWL2 714 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 RBM15Q96T37 977 aaKnown RBP eCLIP13.77□□□□□ -0.213e-11■■■■■ 43.2
NUP54-201ENST00000264883 STRA6Q9BX79 667 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 ARHGEF4Q9NR80 690 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 SERPINA10Q9UK55 444 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 FER1L6Q2WGJ9 1857 aa13.77□□□□□ -0.21
NUP54-201ENST00000264883 FCHO1O14526 889 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 STRNO43815 780 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 TM7SF2O76062 418 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 TRIM49P0CI25 452 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 TRIM49CP0CI26 452 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 PLS3P13797 630 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 IDO1P14902 403 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 RPL5P46777 297 aaKnown RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 TBL3Q12788 808 aaKnown RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 USH1GQ495M9 461 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 MMEL1Q495T6 779 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 TTC7BQ86TV6 843 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 ZNF564Q8TBZ8 553 aaPredicted RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 SLC20A1Q8WUM9 679 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 GMCL1Q96IK5 515 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 BTBD6Q96KE9 485 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 CORO1BQ9BR76 489 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 FOXP3Q9BZS1 431 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 UBE2TQ9NPD8 197 aaPredicted RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 EML1O00423 815 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 NDC80O14777 642 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 PRELPP51888 382 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 OXCT1P55809 520 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 EPC2Q52LR7 807 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 IZUMO3Q5VZ72 239 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 DNAJC14Q6Y2X3 702 aaPredicted RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 TRIM67Q6ZTA4 783 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 OTOP1Q7RTM1 612 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 ADGRG6Q86SQ4 1221 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 DHDDSQ86SQ9 333 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 ULK2Q8IYT8 1036 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 FAM172AQ8WUF8 416 aa13.76□□□□□ -0.21
NUP54-201ENST00000264883 GFM2Q969S9 779 aaKnown RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 MRRFQ96E11 262 aaKnown RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 OXNAD1Q96HP4 312 aaPredicted RBP13.76□□□□□ -0.21
NUP54-201ENST00000264883 CLPTM1LQ96KA5 538 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms