RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 REPS1Q96D71 796 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PIDD1Q9HB75 910 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TRDMT1O14717 391 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TADA2AO75478 443 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TADA3O75528 432 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CRTAMO95727 393 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HMGCRP04035 888 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 GNL1P36915 607 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SERPINB8P50452 374 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 INSCQ1MX18 579 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 LVRNQ6Q4G3 990 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PSTKQ8IV42 348 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SLC5A5Q92911 643 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RANBP17Q9H2T7 1088 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RETREG1Q9H6L5 497 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 VTI1BQ9UEU0 232 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TRAF3IP3Q9Y228 551 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 NWD2Q9ULI1 1742 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PRKCQQ04759 706 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 STRADAQ7RTN6 431 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PPWD1Q96BP3 646 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 DEFB129Q9H1M3 183 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SEPT3Q9UH03 358 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 UBR2Q8IWV8 1755 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 A0A087WZ62 844 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HAUS5O94927 633 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ASGR1P07306 291 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 YWHAHQ04917 246 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RBBP8NLQ8NC74 664 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ZCCHC17Q9NP64 241 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 AGPAT3Q9NRZ7 376 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ARFGEF2Q9Y6D5 1785 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 FAM107AO95990 144 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CD58P19256 250 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ZNF200P98182 395 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 POLD3Q15054 466 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HIST2H2ACQ16777 129 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HIST2H2AA3Q6FI13 130 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 AADATQ8N5Z0 425 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 NOA1Q8NC60 698 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CFAP36Q96G28 342 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ERP44Q9BS26 406 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 APOL6Q9BWW8 343 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RTFDC1Q9BY42 306 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ELOVL4Q9GZR5 314 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PCIF1Q9H4Z3 704 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 LRRC40Q9H9A6 602 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 THG1LQ9NWX6 298 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 GGA2Q9UJY4 613 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ATXN2Q99700 1313 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 GLI1P08151 1106 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 KRT4P19013 534 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RPL3P39023 403 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HMGCS2P54868 508 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CCDC153Q494R4 210 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TBC1D10BQ4KMP7 808 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PLPPR4Q7Z2D5 763 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 MAGEC3Q8TD91 643 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 AFG1LQ8WV93 481 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TRIM4Q9C037 500 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.5□□□□□ -1.692e-9■■■■□ 24.9
VPS13C-202ENST00000261517 SLC45A1Q9Y2W3 748 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 STX5Q13190 355 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TMEM119Q4V9L6 283 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PABPC1LQ4VXU2 614 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CYP4F22Q6NT55 531 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SKAP1Q86WV1 359 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ENGASEQ8NFI3 743 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SYTL2Q9HCH5 934 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SH3BP1Q9Y3L3 701 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 DYRK3O43781 588 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 FGRP09769 529 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 MYL4P12829 197 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ARHGEF7Q14155 803 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 IZUMO3Q5VZ72 239 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PLA2G4FQ68DD2 849 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 C12orf56Q8IXR9 622 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 MRPL1Q9BYD6 325 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 FAM49AQ9H0Q0 323 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PIN4Q9Y237 131 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 GDAQ9Y2T3 454 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PPM1AP35813 382 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ANKRD40Q6AI12 368 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 C7orf57Q8NEG2 295 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 RPL26L1Q9UNX3 145 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 C15orf38-AP3S2A0A0A6YYH1 394 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CCL15-CCL14A0A0B4J2E2 113 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 EEF2KO00418 725 aaKnown RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PJA2O43164 708 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 NDUFS3O75489 264 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SEC23AQ15436 765 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 CCL15Q16663 113 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 TTC19Q6DKK2 380 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ARPINQ7Z6K5 226 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 MGARPQ8TDB4 240 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 HHATLQ9HCP6 504 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 BARX2Q9UMQ3 279 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-202ENST00000261517 PCDHB12Q9Y5F1 795 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 ACTL7BQ9Y614 415 aa4.5□□□□□ -1.69
VPS13C-202ENST00000261517 SALL3Q9BXA9 1300 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms