RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	YGL041W-A	P0C5N3	154 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	PHO13	P19881	312 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	MDH2	P22133	377 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	UTR5	P32630	166 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YBL010C	P32788	280 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	CLB6	P32943	380 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	CPR5	P35176	225 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YOR062C	P36025	268 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	MRPL24	P36525	258 aa	Predicted RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	RRT1	P38192	103 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	RPS20	P38701	121 aa	Known RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	DSE2	P38844	325 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YJL027C	P47063	138 aa	Predicted RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	BOL2	P53082	120 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	MPC3	P53311	146 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YNR064C	P53750	290 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	DAD3	P69850	94 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	MET31	Q03081	177 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	EST3	Q03096	181 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YML079W	Q03629	201 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	FMN1	Q03778	218 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	RIM9	Q04734	239 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YHR007C-A	Q07074	71 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	PRP11	Q07350	266 aa	Predicted RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	ATP20	Q12233	115 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	YNL277W-A	Q3E7Z0	62 aa		0.93	□□□□□ -2.26
VPS55	YJR044C	RPO41	P13433	1351 aa	Known RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	ADE6	P38972	1358 aa	Known RBP	0.93	□□□□□ -2.26
VPS55	YJR044C	FLO9	P39712	1322 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	MYO2	P19524	1574 aa	Known RBP	0.92	□□□□□ -2.26
VPS55	YJR044C	SCL1	P21243	252 aa	Known RBP	0.92	□□□□□ -2.26
VPS55	YJR044C	FYV4	P38783	130 aa	Predicted RBP	0.92	□□□□□ -2.26
VPS55	YJR044C	SVP26	P38869	228 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	GAA1	P39012	614 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YEL073C	P39974	107 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YER181C	P40097	107 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	AYR1	P40471	297 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YJL218W	P40892	196 aa	Known RBP	0.92	□□□□□ -2.26
VPS55	YJR044C	APS3	P47064	194 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	KNH1	P50112	268 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	EMC4	P53073	190 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YNL019C	P53975	284 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	BUD25	P85052	153 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	DML1	Q03652	475 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YHP1	Q04116	353 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	SML1	Q04964	104 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	VPS68	Q12016	184 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YDL157C	Q12082	118 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YOR015W	Q12169	119 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	YIR021W-A	Q3E739	70 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	Q0144	Q9ZZW2	109 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	HSL1	P34244	1518 aa		0.92	□□□□□ -2.26
VPS55	YJR044C	RAD50	P12753	1312 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	MDM35	O60200	86 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SEC11	P15367	167 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SEN2	P16658	377 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	STF2	P16965	84 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	HSP12	P22943	109 aa	Known RBP	0.91	□□□□□ -2.26
VPS55	YJR044C	AHT1	P29589	182 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SPT14	P32363	452 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SDH4	P37298	181 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SPO73	P40031	143 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	MPC1	P53157	130 aa	Known RBP	0.91	□□□□□ -2.26
VPS55	YJR044C	RGM1	Q00453	211 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	SPC24	Q04477	213 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	YMR320W	Q04897	101 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	YPR114W	Q06107	315 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	CNL1	Q06333	122 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	ATG41	Q12048	136 aa		0.91	□□□□□ -2.26
VPS55	YJR044C	FMP49	A0A023PZB3	126 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	COX8	P04039	78 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	PHO85	P17157	305 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	TMA19	P35691	167 aa	Known RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.9	□□□□□ -2.27	not detected
VPS55	YJR044C	SHB17	P36136	271 aa	Known RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	YHR140W	P38842	239 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	VMA7	P39111	118 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	YEL067C	P39978	195 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	YNL200C	P40165	246 aa	Known RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	YGR269W	P40326	108 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	PEP8	P40335	379 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	VMA10	P48836	114 aa	Known RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	GEP7	P53171	287 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	YGR017W	P53210	297 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	THG1	P53215	237 aa	Known RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	POP3	P53833	195 aa	Predicted RBP	0.9	□□□□□ -2.27
VPS55	YJR044C	AIM11	P87275	137 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	NKP2	Q06162	153 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	KEI1	Q06346	221 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	FRQ1	Q06389	190 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	ANT1	Q06497	328 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	RAF1	Q06891	181 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	ATG10	Q07879	167 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	HRT1	Q08273	121 aa		0.9	□□□□□ -2.27
VPS55	YJR044C	DDI2	P0CH63	225 aa		0.89	□□□□□ -2.27
VPS55	YJR044C	DDI3	P0CH64	225 aa		0.89	□□□□□ -2.27
VPS55	YJR044C	RPS1A	P33442	255 aa	Known RBP	0.89	□□□□□ -2.27
VPS55	YJR044C	SFT2	P38166	215 aa		0.89	□□□□□ -2.27
VPS55	YJR044C	YPT31	P38555	223 aa	Known RBP	0.89	□□□□□ -2.27
VPS55	YJR044C	NSE4	P43124	402 aa		0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 26.1 ms