RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	ASS1	P00966	412 aa	Known RBP	28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	WARS	P23381	471 aa	Known RBP	28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	ELF1	P32519	619 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	GTF2H1	P32780	548 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	DPCR1	Q3MIW9	517 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	SPOPL	Q6IQ16	392 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	GRASP	Q7Z6J2	395 aa	Predicted RBP	28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	SEMA4D	Q92854	862 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	MMS19	Q96T76	1030 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	PI4K2A	Q9BTU6	479 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	SDCBP2	Q9H190	292 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	MMRN2	Q9H8L6	949 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	TMEM8A	Q9HCN3	771 aa		28.61	■■■□□ 2.17
VEGFA-231	ENST00000640499	BICDL2	A1A5D9	508 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	C2CD4D	B7Z1M9	353 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	ATP2C2	O75185	946 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	TACC1	O75410	805 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	LHX1	P48742	406 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	SGSM1	Q2NKQ1	1148 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	ZNF699	Q32M78	642 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	MLKL	Q8NB16	471 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	SLC35C1	Q96A29	364 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	SMYD3	Q9H7B4	428 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	PIDD1	Q9HB75	910 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	APOBEC3G	Q9HC16	384 aa	Known RBP	28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	CEP72	Q9P209	647 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	RWDD2A	Q9UIY3	292 aa		28.6	■■■□□ 2.17
VEGFA-231	ENST00000640499	NRG2	O14511	850 aa	Predicted RBP	28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	SOAT2	O75908	522 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	FAM163B	P0C2L3	166 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	CDH8	P55286	799 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	TWF1	Q12792	350 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	CBWD6	Q4V339	395 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	INTS6L	Q5JSJ4	861 aa	Known RBP	28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	CBWD3	Q5JTY5	395 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	CBWD5	Q5RIA9	395 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	FAM171B	Q6P995	826 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	FRMD5	Q7Z6J6	570 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	DNAJC25	Q9H1X3	360 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	28.59	■■■□□ 2.17	7e-7	■■■■□ 19.4
VEGFA-231	ENST00000640499	ARMCX3	Q9UH62	379 aa	Predicted RBP	28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	YIPF1	Q9Y548	306 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	CLUH	O75153	1309 aa		28.59	■■■□□ 2.17
VEGFA-231	ENST00000640499	MYBPHL	A2RUH7	354 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	TNFRSF10A	O00220	468 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	SSTR3	P32745	418 aa	Predicted RBP	28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	RAP1GAP	P47736	663 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	NLRP12	P59046	1061 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	TNNC1	P63316	161 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	MYL7	Q01449	175 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	KRT39	Q6A163	491 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	LPIN3	Q9BQK8	851 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	SRRT	Q9BXP5	876 aa	Known RBP	28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	CRTAC1	Q9NQ79	661 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	GTF3C4	Q9UKN8	822 aa		28.58	■■■□□ 2.17
VEGFA-231	ENST00000640499	DOCK8	Q8NF50	2099 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	PDGFRB	P09619	1106 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	PIK3CA	P42336	1068 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	DCAF17	Q5H9S7	520 aa	Predicted RBP	28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	ZNF667	Q5HYK9	610 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	POTEH	Q6S545	545 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	DCP1B	Q8IZD4	617 aa	Known RBP	28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	TAF4B	Q92750	862 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	HSFX1	Q9UBD0	423 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	UST	Q9Y2C2	406 aa		28.57	■■■□□ 2.16
VEGFA-231	ENST00000640499	XYLB	O75191	536 aa		28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	GNL1	P36915	607 aa	Predicted RBP	28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	ASPA	P45381	313 aa		28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	IRF2BP1	Q8IU81	584 aa		28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	RNF135	Q8IUD6	432 aa		28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	MYADM	Q96S97	322 aa		28.56	■■■□□ 2.16
VEGFA-231	ENST00000640499	LRG1	P02750	347 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	HAPLN1	P10915	354 aa	Predicted RBP	28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	MARS	P56192	900 aa	Known RBP	28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	PSMC1	P62191	440 aa	Known RBP	28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	TSPY1	Q01534	308 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	SLC5A9	Q2M3M2	681 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	TCERG1L	Q5VWI1	586 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	SCARA5	Q6ZMJ2	495 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	HS6ST3	Q8IZP7	471 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	OR6B3	Q8NGW1	331 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	ITFG1	Q8TB96	612 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	SYT15	Q9BQS2	421 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	LRRC3	Q9BY71	257 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	DPEP3	Q9H4B8	488 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	METTL14	Q9HCE5	456 aa	Known RBP	28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	CDH9	Q9ULB4	789 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	COQ4	Q9Y3A0	265 aa		28.55	■■■□□ 2.16
VEGFA-231	ENST00000640499	MBD3	O95983	291 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	ATF6	P18850	670 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	PCSK1	P29120	753 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	MXI1	P50539	228 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	SMARCB1	Q12824	385 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	C2orf15	Q8WU43	125 aa	Known RBP	28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	BCO2	Q9BYV7	579 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	ABI2	Q9NYB9	513 aa	Predicted RBP	28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	NR2E1	Q9Y466	385 aa		28.54	■■■□□ 2.16
VEGFA-231	ENST00000640499	STX10	O60499	249 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	RHO	P08100	348 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	PTPN2	P17706	415 aa		28.53	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms