RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PBLDP30039 288 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PRIM2P49643 509 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NLRP11P59045 1033 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 GRM4Q14833 912 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM71Q2Q1W2 868 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ALFQ53S48 1182 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 AGMOQ6ZNB7 445 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SUSD6Q92537 303 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 RASSF4Q9H2L5 321 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NDST4Q9H3R1 872 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 GTF2A1LQ9UNN4 478 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 A0A087WUV0 522 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CYP2D7A0A087X1C5 515 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TBC1D3BA6NDS4 549 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 FAM196BA6NMK8 535 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 VWA5AO00534 786 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 MYBP10242 640 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 MAPK1P28482 360 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PDX1P52945 283 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EPHB4P54760 987 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SRSF11Q05519 484 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CDC16Q13042 620 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NCOA4Q13772 614 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NAA30Q147X3 362 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SLC39A14Q15043 492 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NFE2Q16621 373 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 COBLL1Q53SF7 1204 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EPM2AIP1Q7L775 607 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PRUNE1Q86TP1 453 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SCAIQ8N9R8 606 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF507Q8TCN5 953 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 DTX3LQ8TDB6 740 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EEF2KMTQ96G04 330 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 MOV10L1Q9BXT6 1211 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PRRG3Q9BZD7 231 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CPA4Q9UI42 421 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 KLF15Q9UIH9 416 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SNX6Q9UNH7 406 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ADGRA2Q96PE1 1338 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 AKR1A1P14550 325 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 IFNAR1P17181 557 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ACTN3Q08043 901 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ELOAQ14241 798 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 HLFQ16534 295 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CAMK1DQ8IU85 385 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TBC1D16Q8TBP0 767 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 KLHL29Q96CT2 875 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 FAM161BQ96MY7 647 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 FANCLQ9NW38 375 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 BARHL2Q9NY43 387 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CASZ1Q86V15 1759 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 A0A087X0T9 212 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 F8W810 466 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 FOXP2O15409 715 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SLC1A1P43005 524 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ACOX1Q15067 660 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EPHA7Q15375 998 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TAF13Q15543 124 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CLEC16AQ2KHT3 1053 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PABPC1LQ4VXU2 614 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 C11orf88Q6PI97 169 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ATP11CQ8NB49 1132 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM143Q96AN5 459 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ARHGAP9Q9BRR9 750 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC90BQ9GZT6 254 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EPN3Q9H201 632 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM245Q9H330 911 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 USE1Q9NZ43 259 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CEP72Q9P209 647 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 DBNLQ9UJU6 430 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TRAV19A0A0A6YYK7 116 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 H7C1W4 665 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ANXA9O76027 345 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SLFN14P0C7P3 912 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CES1P23141 567 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CCNE1P24864 410 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 HTR1BP28222 390 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ITGADQ13349 1161 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 INPP5AQ14642 412 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 QRICH1Q2TAL8 776 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CYP4Z1Q86W10 505 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 S100A13Q99584 98 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 C17orf80Q9BSJ5 609 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 MYLK2Q9H1R3 596 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 ATXN3LQ9H3M9 355 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PCMTD2Q9NV79 361 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 RIC8BQ9NVN3 520 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 WARS2Q9UGM6 360 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CPSF1Q10570 1443 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EMSYQ7Z589 1322 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 STX7O15400 261 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 TBC1D4O60343 1298 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PSMC3P17980 439 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 MARSP56192 900 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 POU4F1Q01851 419 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 IFT88Q13099 833 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 RASIP1Q5U651 963 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 SFR1Q86XK3 245 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 RNASE11Q8TAA1 199 aaKnown RBP6.39□□□□□ -1.39
SCN1A-217ENST00000637988 WNK4Q96J92 1243 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms