RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SOWAHAQ2M3V2 549 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 ASTLQ6HA08 431 aaPredicted RBP20.68■□□□□ 0.9
CLN3-260ENST00000637578 DCP1BQ8IZD4 617 aaKnown RBP20.68■□□□□ 0.9
CLN3-260ENST00000637578 FAM122AQ96E09 287 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 HPDLQ96IR7 371 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 PKMYT1Q99640 499 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 FBXL21Q9UKT6 434 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 SNX9Q9Y5X1 595 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 KMT2EQ8IZD2 1858 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 KRBA1A5PL33 1030 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 KINO60870 393 aaKnown RBP20.67■□□□□ 0.9
CLN3-260ENST00000637578 DLATP10515 647 aaKnown RBP20.67■□□□□ 0.9
CLN3-260ENST00000637578 CLDN10P78369 228 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 CWF19L1Q69YN2 538 aaKnown RBP20.67■□□□□ 0.9
CLN3-260ENST00000637578 DNAJB7Q7Z6W7 309 aaPredicted RBP20.67■□□□□ 0.9
CLN3-260ENST00000637578 SIX5Q8N196 739 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 SPPL2BQ8TCT7 592 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 GPR152Q8TDT2 470 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 ZNF516Q92618 1163 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 PSMG2Q969U7 264 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 TIGD1Q96MW7 591 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 FNBP1Q96RU3 617 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 TMLHEQ9NVH6 421 aa20.67■□□□□ 0.9
CLN3-260ENST00000637578 EXOC3O60645 756 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 SOAT2O75908 522 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 CST3P01034 146 aaPredicted RBP20.66■□□□□ 0.9
CLN3-260ENST00000637578 TNNI1P19237 187 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 FCARP24071 287 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 GPC5P78333 572 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 KCNB1Q14721 858 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 TMEM105Q8N8V8 129 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 PRSS33Q8NF86 280 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 SHKBP1Q8TBC3 707 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 PLEKHO2Q8TD55 490 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 CCDC127Q96BQ5 260 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 KXD1Q9BQD3 176 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 MFSD1Q9H3U5 465 aa20.66■□□□□ 0.9
CLN3-260ENST00000637578 DDX43Q9NXZ2 648 aaKnown RBP20.66■□□□□ 0.9
CLN3-260ENST00000637578 HAPLN1P10915 354 aaPredicted RBP20.65■□□□□ 0.9
CLN3-260ENST00000637578 MYL4P12829 197 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 ATF6P18850 670 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 LHX1P48742 406 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 FAM78AQ5JUQ0 283 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 TANGO2Q6ICL3 276 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 OSTM1Q86WC4 334 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 ELSPBP1Q96BH3 223 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 ZSWIM3Q96MP5 696 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 ASB16Q96NS5 453 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 PLA2G2FQ9BZM2 168 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 TRPV4Q9HBA0 871 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 TRAF3IP3Q9Y228 551 aa20.65■□□□□ 0.9
CLN3-260ENST00000637578 AOC1P19801 751 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 TSPY1Q01534 308 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 NFE2Q16621 373 aaPredicted RBP20.64■□□□□ 0.9
CLN3-260ENST00000637578 INTS6LQ5JSJ4 861 aaKnown RBP20.64■□□□□ 0.9
CLN3-260ENST00000637578 GAREM2Q75VX8 874 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 ITIH5Q86UX2 942 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 ADGRF2Q8IZF7 708 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 PARD3BQ8TEW8 1205 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 KBTBD7Q8WVZ9 684 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 CCDC34Q96HJ3 373 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 GPR88Q9GZN0 384 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 ZNF334Q9HCZ1 680 aaPredicted RBP20.64■□□□□ 0.9
CLN3-260ENST00000637578 R3HCC1Q9Y3T6 440 aaKnown RBP20.64■□□□□ 0.9
CLN3-260ENST00000637578 PCDHB5Q9Y5E4 795 aa20.64■□□□□ 0.9
CLN3-260ENST00000637578 KIF20AO95235 890 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 STAU1O95793 577 aaKnown RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 FAM163BP0C2L3 166 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 MYL7Q01449 175 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 TCF15Q12870 199 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 PNOCQ13519 176 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 NFIL3Q16649 462 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 MGAT5BQ3V5L5 792 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 PHLDB3Q6NSJ2 640 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 CCDC47Q96A33 483 aaKnown RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 SEPT5Q99719 369 aaPredicted RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 ABCB6Q9NP58 842 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 FGF19O95750 216 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 NR3C1P04150 777 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 GJA1P17302 382 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 ACAT1P24752 427 aaKnown RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 PCSK1P29120 753 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 CDR1P51861 262 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 TEAD2Q15562 447 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 FAM171BQ6P995 826 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 GUF1Q8N442 669 aaKnown RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 FLCNQ8NFG4 579 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 SMARCD2Q92925 531 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 LPIN3Q9BQK8 851 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 XYLT2Q9H1B5 865 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 ZFP14Q9HCL3 533 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 ARHGEF3Q9NR81 526 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 ABI2Q9NYB9 513 aaPredicted RBP20.63■□□□□ 0.89
CLN3-260ENST00000637578 CA14Q9ULX7 337 aa20.63■□□□□ 0.89
CLN3-260ENST00000637578 A0A1W2PRU2 124 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 PI15O43692 258 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 WARSP23381 471 aaKnown RBP20.62■□□□□ 0.89
CLN3-260ENST00000637578 CASP4P49662 377 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 AP3M2P53677 418 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 STARD6P59095 220 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms