RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ITGB3P05106 788 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 CYP2C9P11712 490 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 RRM1P23921 792 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 MDH1P40925 334 aaKnown RBP12.2□□□□□ -0.46
CLN6-217ENST00000636964 RGS2P41220 211 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 AP3M2P53677 418 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 BPIFB4P59827 614 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 POU5F1BQ06416 359 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SURF1Q15526 300 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SNCBQ16143 134 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 SLC10A6Q3KNW5 377 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 WDR72Q3MJ13 1102 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 C1orf127Q8N9H9 656 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 DNAJB3Q8WWF6 145 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 USP6NLQ92738 828 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 C11orf70Q9BRQ4 267 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 CISHQ9NSE2 258 aa12.2□□□□□ -0.46
CLN6-217ENST00000636964 FAM107AO95990 144 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 RPSAP08865 295 aaKnown RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 NR1D1P20393 614 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 TPP2P29144 1249 aaPredicted RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 ITIH3Q06033 890 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 MFSD10Q14728 455 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 FAM187BQ17R55 369 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 TRIM42Q8IWZ5 723 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 ZNF606Q8WXB4 792 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 XYLT2Q9H1B5 865 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 STIM2Q9P246 746 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 SIX4Q9UIU6 781 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 GTF3C4Q9UKN8 822 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 NR2E1Q9Y466 385 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 HES2Q9Y543 173 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 TREHO43280 583 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 HSF2BPO75031 334 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 GJB6O95452 261 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 F2P00734 622 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 FGGP02679 453 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 CYP1A2P05177 515 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 MCF2P10911 925 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 NSFP46459 744 aaKnown RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 ANKRD20A8PQ5CZ79 823 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 DAB2IPQ5VWQ8 1189 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 MCOLN2Q8IZK6 566 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN6-217ENST00000636964 NIF3L1Q9GZT8 377 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 AP5M1Q9H0R1 490 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 PGRMC1O00264 195 aaKnown RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 KRIT1O00522 736 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 CLNS1AP54105 237 aaKnown RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 EMBQ6PCB8 327 aa12.19□□□□□ -0.46
CLN6-217ENST00000636964 IFNLR1Q8IU57 520 aaPredicted RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 DDX47Q9H0S4 455 aaKnown RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
CLN6-217ENST00000636964 RRN3P2A6NIE6 340 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 SPOPO43791 374 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 NPTXRO95502 500 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 CATSPER4Q7RTX7 472 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ZSWIM1Q9BR11 485 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ADAMTS10Q9H324 1103 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ANAPC7Q9UJX3 599 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 NFU1Q9UMS0 254 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 NRCAMQ92823 1304 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 TRIP12Q14669 1992 aaPredicted RBP12.18□□□□□ -0.46
CLN6-217ENST00000636964 A0A1B0GUA9 196 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 MYADML2A6NDP7 307 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 E7EVH7 732 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 GPR32O75388 356 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 IL18RAPO95256 599 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 CA8P35219 290 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ASPAP45381 313 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 PSEN2P49810 448 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 GUCY2DQ02846 1103 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 DBN1Q16643 649 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 CYP4F22Q6NT55 531 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ACTRT1Q8TDG2 376 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 IFT81Q8WYA0 676 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 ACAP3Q96P50 834 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 APBA2Q99767 749 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 EIF2AQ9BY44 585 aaKnown RBP12.18□□□□□ -0.46
CLN6-217ENST00000636964 LMCD1Q9NZU5 365 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 GGA2Q9UJY4 613 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 GABRQQ9UN88 632 aa12.18□□□□□ -0.46
CLN6-217ENST00000636964 RAD51CO43502 376 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 HEXIM1O94992 359 aaKnown RBP12.17□□□□□ -0.46
CLN6-217ENST00000636964 CYP1A1P04798 512 aaPredicted RBP12.17□□□□□ -0.46
CLN6-217ENST00000636964 C6orf222P0C671 652 aaPredicted RBP12.17□□□□□ -0.46
CLN6-217ENST00000636964 IMPDH2P12268 514 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 TNFRSF8P28908 595 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 GCKP35557 465 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 ZNF677Q86XU0 584 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 MAGEC3Q8TD91 643 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 TFAP2BQ92481 460 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 ADPGKQ9BRR6 497 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 APOL6Q9BWW8 343 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 LRRC4CQ9HCJ2 640 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 EPB41L5Q9HCM4 733 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 PPANQ9NQ55 473 aaKnown RBP12.17□□□□□ -0.46
CLN6-217ENST00000636964 SNTG2Q9NY99 539 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 ADAM22Q9P0K1 906 aa12.17□□□□□ -0.46
CLN6-217ENST00000636964 TLL2Q9Y6L7 1015 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms