RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 NCK2O43639 380 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 ATP2C2O75185 946 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 GPC5P78333 572 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 CENPCQ03188 943 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 MMS22LQ6ZRQ5 1243 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 TMCO2Q7Z6W1 182 aaPredicted RBP21.37■■□□□ 1.01
CLN3-250ENST00000636839 TXLNBQ8N3L3 684 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 RNF10Q8N5U6 811 aaKnown RBP21.37■■□□□ 1.01
CLN3-250ENST00000636839 UBA3Q8TBC4 463 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 ZNF653Q96CK0 615 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 CASD1Q96PB1 797 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 C11orf70Q9BRQ4 267 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 TJP2Q9UDY2 1190 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 LAMA2P24043 3122 aaKnown RBP21.37■■□□□ 1.01
CLN3-250ENST00000636839 O00370 1275 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 TACC1O75410 805 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 URI1O94763 535 aaPredicted RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 UPP2O95045 317 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 KIF4AO95239 1232 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 TUBB4AP04350 444 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 NSFP46459 744 aaKnown RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 PPP1R26Q5T8A7 1209 aaPredicted RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 MON1BQ7L1V2 547 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 SNX25Q9H3E2 840 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 PCDHGC3Q9UN70 934 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 STXBP5LQ9Y2K9 1186 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 NCANO14594 1321 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 MICAL2O94851 1124 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 FTCDO95954 541 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 VDRP11473 427 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 RRM1P23921 792 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 PSMC1P62191 440 aaKnown RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 DSC1Q08554 894 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 KIAA0319Q5VV43 1072 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 DSTYKQ6XUX3 929 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 COLGALT2Q8IYK4 626 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 TOP6BLQ8N6T0 577 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 TPCN2Q8NHX9 752 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 RFFLQ8WZ73 363 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 BTBD6Q96KE9 485 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 ELAC1Q9H777 363 aaKnown RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 LRFN2Q9ULH4 789 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 PACSIN2Q9UNF0 486 aaPredicted RBP21.36■■□□□ 1.01
CLN3-250ENST00000636839 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.36■■□□□ 1.01
CLN3-250ENST00000636839 HYOU1Q9Y4L1 999 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 TTC3P53804 2025 aa21.36■■□□□ 1.01
CLN3-250ENST00000636839 CTAGE9A4FU28 777 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 GJB6O95452 261 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 TIMP1P01033 207 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 RNASELQ05823 741 aaKnown RBP21.35■■□□□ 1.01
CLN3-250ENST00000636839 PTP4A2Q12974 167 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 SGO2Q562F6 1265 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 TRIM72Q6ZMU5 477 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 UBE2Q1Q7Z7E8 422 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 NAPGQ99747 312 aaPredicted RBP21.35■■□□□ 1.01
CLN3-250ENST00000636839 CTTNBP2NLQ9P2B4 639 aa21.35■■□□□ 1.01
CLN3-250ENST00000636839 CNOT8Q9UFF9 292 aaKnown RBP21.35■■□□□ 1.01
CLN3-250ENST00000636839 ATP8B3O60423 1300 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 ACRP10323 421 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 TRIM58Q8NG06 486 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 URGCPQ8TCY9 931 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 TRIM7Q9C029 511 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 PRDM10Q9NQV6 1147 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 ADAM22Q9P0K1 906 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 PRG3Q9Y2Y8 225 aaPredicted RBP21.34■■□□□ 1.01
CLN3-250ENST00000636839 PCDHGC5Q9Y5F6 944 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 A0A0A6YYK5 440 aaPredicted RBP21.34■■□□□ 1.01
CLN3-250ENST00000636839 M0QYV0 167 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 RIOK3O14730 519 aaKnown RBP21.34■■□□□ 1.01
CLN3-250ENST00000636839 SRGAP2O75044 1071 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 CYP1A2P05177 515 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 CCDC130P13994 396 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 AARSP49588 968 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLN3-250ENST00000636839 CNGA2Q16280 664 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 UNC93AQ86WB7 457 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 CPNE8Q86YQ8 564 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 ABI1Q8IZP0 508 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 LRRC57Q8N9N7 239 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 DDX27Q96GQ7 796 aaKnown RBP21.34■■□□□ 1.01
CLN3-250ENST00000636839 NUP85Q9BW27 656 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 TSPAN16Q9UKR8 245 aa21.34■■□□□ 1.01
CLN3-250ENST00000636839 TULP2O00295 520 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 MED7O43513 233 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 BUB1BO60566 1050 aaPredicted RBP21.33■■□□□ 1.01
CLN3-250ENST00000636839 PARNO95453 639 aaKnown RBP21.33■■□□□ 1.01
CLN3-250ENST00000636839 PFKMP08237 780 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 RAG1P15918 1043 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 WARSP23381 471 aaKnown RBP21.33■■□□□ 1.01
CLN3-250ENST00000636839 PBX3P40426 434 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 OR1G1P47890 313 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 GOLGA7BQ2TAP0 167 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 CYP4A22Q5TCH4 519 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 PHF13Q86YI8 300 aaPredicted RBP21.33■■□□□ 1.01
CLN3-250ENST00000636839 TTC39CQ8N584 583 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 TMEM35BQ8NCS4 154 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 PSMB7Q99436 277 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 NRDE2Q9H7Z3 1164 aa21.33■■□□□ 1.01
CLN3-250ENST00000636839 PIK3R2O00459 728 aa21.33■■□□□ 1
CLN3-250ENST00000636839 GABRDO14764 452 aa21.33■■□□□ 1
CLN3-250ENST00000636839 KIAA0355O15063 1070 aa21.33■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms